Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_011273.1 Length=164602 Score E Sequences producing significant alignments: (Bits) Value seq5165 98.7 1e-15 seq363 98.7 1e-15 seq24579 91.5 2e-13 >seq5165 Length=98167 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||| | |||||||||||||||||| ||||||||||||||| ||| ||| ||||||||| Sbjct 18611 GCGGGATGGAGCAGCTCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCGTAGGTTCAAAT 18552 Query 92675 CCCACTCCCGCCAC 92688 || |||||||| || Sbjct 18551 CCTACTCCCGCAAC 18538 >seq363 Length=289854 Score = 98.7 bits (108), Expect = 1e-15 Identities = 110/143 (77%), Gaps = 3/143 (2%) Strand=Plus/Minus Query 110965 CTGGTGCCAAGCCCAA-GCCGTGCATCTGCGGCCCTGGCCGTGGCTCCGGCGGCGGCTCG 111023 |||| |||||| ||| | ||||| || |||| || || || ||||||| ||||||| Sbjct 188654 CTGG-GCCAAGAACAACGGCGTGCCGGTGGGGCCG-GGTCGCGGTTCCGGCGCCGGCTCG 188597 Query 111024 CTGGTGAACTACCTGCTGGGCATCACCTCGCTCGACCCGATCAAGTACGACCTGTCGTTC 111083 |||||| ||| |||| ||||||| || || |||||||||||||||||| |||| Sbjct 188596 CTGGTGGCTTACTCGCTGTTCATCACCGACCTGGATCCGATCAAGTACGACCTGCTGTTC 188537 Query 111084 GAGCGGTTCATCAACCCCGACCG 111106 ||||| ||| |||| ||||| || Sbjct 188536 GAGCGCTTCCTCAATCCCGAGCG 188514 >seq24579 Length=20444 Score = 91.5 bits (100), Expect = 2e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 136001 CTTCGACGAGAACGTCGGCGTGGCGCGGGCGAAGAACAAGTGCATCGAGCTGCTCATGGA 136060 |||||| ||||||||||| | || |||||| ||||| ||| | || |||| ||||| Sbjct 14155 CTTCGAGAAGAACGTCGGCATAGCCGCGGCGAAAAACAAATGCTTTGAATTGCTGATGGA 14096 Query 136061 CGCGGGCTGCGAGCACCTGTTCCTGTTCGACGATGATTGCTGGCCCAA 136108 ||| ||| ||||| |||||||||||||||||||||||||| || Sbjct 14095 TATCGGCGTCGATCACCTTTTCCTGTTCGACGATGATTGCTGGCCTAA 14048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 525412000134720