Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq2234 161 7e-35 seq32926 86.0 4e-12 >seq2234 Length=154088 Score = 161 bits (178), Expect = 7e-35 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 |||| |||| | ||||||||| | ||| || ||||| |||||||| ||||| ||||| Sbjct 12106 TGCCTCCTCTGAGTCTTAAAACCAGATGCAGAGTAGATTCTTTTTGAATGTTATAATCCG 12047 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| | | | ||||||| ||| || ||||| | || |||||||| || || | Sbjct 12046 ACAGAGTACGGCCATCTTCTAGTTGCTTACCAGCAAAAATTAAACGCTGCTGATCTGGGG 11987 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||||||||| ||||| ||||| ||| ||| |||| || ||||| || ||| | Sbjct 11986 GAATTCCTTCTTTGTCCTGGATTTTTGCTTTAACATTTTCAATGGTATCACTTGGTTCGA 11927 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | ||||| ||||| ||||||||||| ||||| ||||||||||||||||| Sbjct 11926 CTTCTAATGTAATTGTTTTACCTGTTAGAGTCTTTACAAAAATTTGCAT 11878 Score = 147 bits (162), Expect = 2e-30 Identities = 174/236 (74%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| | || | ||||| |||||| || || || ||||| |||||||| || | Sbjct 10736 CCACCTCTGAGCCTGAGAACTAGATGAAGTGTGGATTCCTTTTGAATGTTGTAGTCCGAG 10677 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| | ||||| |||||||| ||||| | ||||| || ||||| || ||| Sbjct 10676 AGGGTTCTTCCATCTTCCAATTGTTTTCCAGCAAAGATCAATCGTTGTTGATCTGGAGGA 10617 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||| ||||| ||| ||| |||||| |||| || ||||| ||| || || Sbjct 10616 ATTCCTTCTTTGTCCTGAATCTTGGCCTTTACATTTTCAATGGTATCACTAGGCTCAACC 10557 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAT 15185 |||| || ||||| || || || |||||||| |||||||| ||||| || |||| Sbjct 10556 TCTAGAGTGATGGTCTTGCCGGTGAGAGTTTTCACAAAAATCTGCATTTTGTAAAT 10501 Score = 145 bits (160), Expect = 5e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 |||| |||| | || || |||| ||| || ||||| ||||| || |||||||| || Sbjct 11422 TGCCTCCTCTAAGCCTCAAGACTAGATGTAGAGTAGATTCTTTCTGAATGTTGTAGTCCG 11363 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| | | | ||||||| ||| || ||||| | ||||||||||||||||| | Sbjct 11362 ATAGAGTACGGCCATCTTCTAGTTGCTTACCAGCAAAAATCAAACGCTGTTGGTCTGGGG 11303 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||| ||||| || || ||||| | || ||| ||||||| || |||||| ||| Sbjct 11302 GAATACCTTCTTTATCTTGGATTTTTGTCTTGACATTTTCTATTGTGTCGCTAGGTTCAC 11243 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 |||||||| ||||| || ||||||| |||||| ||||| ||||||||| Sbjct 11242 TTTCTAAGGTTATGGTCTTCCCTGTCAAAGTTTTGACAAATATTTGCATA 11193 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| ||||| | ||||| ||| || ||||| |||||||| ||||||||||| Sbjct 12332 CCTCCTCTTAATCTGAGAACTAGATGGAGTGTAGACTCTTTTTGGATGTTGTAATCCGAC 12273 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | | ||||| | ||||| ||||| | |||| | || || || |||| Sbjct 12272 AGGGTACGCCCATCTTCAAGCTGTTTACCAGCAAAAATCAGCCTTTGCTGATCTGGTGGA 12213 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| || || |||||| |||| ||| |||| || |||||||| |||||| Sbjct 12212 ATGCCTTCTTTATCTTGAATTTTTGTTTTGACATTTTCAATTGTATCGCTTGGTTCTACT 12153 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 |||||||| ||||| || || || || ||||| |||||||||||||| Sbjct 12152 TCTAAGGTGATGGTCTTTCCAGTGAGGGTTTTAACAAAAATTTGCAT 12106 Score = 132 bits (146), Expect = 3e-26 Identities = 169/231 (73%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 |||| |||| ||| || | ||| || || || ||||| || || || || || ||||| Sbjct 12874 TGCCTCCTCTCAACCTGAGAACCAAGTGTAGAGTAGATTCCTTCTGGATATTATAATC-- 12817 Query 15008 TGAGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTT 15065 ||| || |||| | ||||| | |||||| ||||| | || || | ||| || || Sbjct 12816 TGACAAAGTTCTGCCATCTTCAAGTTGTTTACCAGCAAAGATTAACCTCTGCTGATCTGG 12757 Query 15066 TGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTC 15125 ||||| ||||| || || |||||| ||| ||| | || || ||||| ||| ||| Sbjct 12756 GGGAATACCTTCTTTATCCTGGATTTTGGCTTTCACATTCTCAATTGTATCACTAGGTTC 12697 Query 15126 TACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || |||||||| |||||||| || ||||| ||||| |||||||||||||| Sbjct 12696 AACTTCTAAGGTGATGGTTTTGCCAGTCAGGGTTTTAACAAAAATTTGCAT 12646 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| ||| || | ||||||||| | ||||| |||||||| ||||||||||| Sbjct 11648 CCTCCTCTCAACCTCAGAACTAAATGTAATGTAGATTCTTTTTGGATGTTGTAATCAGAA 11589 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | | ||||| || || || ||||| | || | | |||||| || || Sbjct 11588 AGAGTACGACCATCTTCCAACTGCTTACCAGCAAAAATTAGCCTCTGTTGATCTGGGGGG 11529 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| ||||| ||||||| ||| || ||||||| || || ||| ||||| Sbjct 11528 ATACCTTCTTTGTCTTGAATTTTGGCTTTGACGTTTTCTATTGTGTCACTAGGCTCTACT 11469 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || ||||| |||||||| || || || ||||| || ||||||||||| Sbjct 11468 TCCAAGGTGATGGTTTTGCCAGTTAGGGTTTTCACGAAAATTTGCAT 11422 Score = 122 bits (134), Expect = 6e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| || ||||| || || ||||| || || |||||||| ||| | | | ||||| Sbjct 11175 AACCAAGTGAAGAGTGGATTCTTTCTGGATATTGTAATCAGACAGAGTACGACCATCTTC 11116 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | ||||| || ||| | ||||| | ||| ||||| || || ||||| || || Sbjct 11115 AAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGGTCTGGAGGGATGCCTTCTTTATCCTG 11056 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||||| |||| ||| ||||||| || |||||| ||| || ||||| || ||||| || Sbjct 11055 GATTTTTGTTTTGACATTTTCTATTGTGTCGCTAGGTTCAACTTCTAACGTTATGGTCTT 10996 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||||||||| ||||| || |||||||| Sbjct 10995 CCCTGTCAGAGTCTTTACGAATATTTGCAT 10966 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | ||| ||||| || || || ||||| || || || || || || || Sbjct 13464 CCACCACGAAGTCTCAAAACCAAGTGTAGAGTAGACTCCTTCTGAATATTATAGTCAGAC 13405 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| | ||||| || ||||| ||||| | || | ||| ||||| || ||| Sbjct 13404 AGGGTTCTTCCATCTTCCAACTGTTTACCAGCAAAGATGAGACGTTGTTGATCTGGTGGT 13345 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 |||||||||||||| || ||||| ||| || |||| |||||||| || || || Sbjct 13344 ATTCCTTCCTTGTCTTGGATCTTTGC-TTTAACGTTTTCAATAGTATCACTGGGCTCGAC 13286 Query 15129 GTCTAAGGTAATGGTTTTACCT 15150 |||| ||||| ||||| ||| Sbjct 13285 TTCTAGTGTAATTGTTTTTCCT 13264 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 |||| ||||| | || || |||| ||| || || || ||||| || ||||| || || Sbjct 12646 TGCCTCCTCGGAGCCTCAAGACTAGATGCAGAGTTGATTCTTTCTGAATGTTATAGTCCG 12587 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 || ||| | ||||| | |||||| || ||| | || || | ||| || || | Sbjct 12586 ATAGGGTTCGGCCATCTTCAAGTTGTTTACCTGCGAAGATTAACCTCTGCTGATCTGGAG 12527 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||| ||||| || || |||||| ||| ||| | || || ||||| || ||| | Sbjct 12526 GAATACCTTCTTTATCTTGAATTTTAGCTTTCACATTCTCAATGGTATCACTTGGTTCAA 12467 Query 15128 CGTCTAAGGTAATGGTTTTACCT 15150 | || | ||||||||||||||| Sbjct 12466 CTTCAAGAGTAATGGTTTTACCT 12444 >seq32926 Length=14205 Score = 86.0 bits (94), Expect = 4e-12 Identities = 157/228 (69%), Gaps = 9/228 (4%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | ||| ||||| || || | ||||| || || || || || || || Sbjct 13894 CCACCACGAAGTCTCAAAACCAAGTGTACAGTAGACTCCTTCTGAATATTATAGTCAGAC 13953 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| | ||||| || ||||| | || | ||| ||||| || ||| Sbjct 13954 AGGGTTCTTCCATCTTCCAA-------CCAGCAAAAATGAGACGTTGTTGATCTGGTGGT 14006 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 |||||||||||||| || ||||| ||| || |||| |||| ||| || || || Sbjct 14007 ATTCCTTCCTTGTCTTGGATCTTTGC-TTTAACGTTTTCAATAGCATCACTGGGCTCGAC 14065 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 |||| ||||| ||||| ||||| |||||||| || || || ||||| Sbjct 14066 TTCTAGTGTAATTGTTTTTCCTGTTAGAGTTTTGACGAATATCTGCAT 14113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356606943351260