Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_011589.1 Length=40287 Score E Sequences producing significant alignments: (Bits) Value seq109026 84.2 6e-12 >seq109026 Length=1728 Score = 84.2 bits (92), Expect = 6e-12 Identities = 317/487 (65%), Gaps = 23/487 (5%) Strand=Plus/Plus Query 28572 ATCGAGGTAATCCGCCCAGACCTGCATCATCCGCACGCGCTCCTGCAGGTGCGATGTGC- 28630 ||| || || || ||||| ||||||||||| | | |||| |||||| | || || Sbjct 296 ATCCAGATAGTCTGCCCATGCCTGCATCATCTTGATCCTCTCCGGCAGGTAC--TGGGCA 353 Query 28631 -GGTTGTAGG---CCCGGCCGTTGGGATCC-TTCACCGCGTGAGCAAGCTGGTGCTCGAT 28685 ||||||||| | | | ||| ||| ||| ||| || || | ||| |||| || Sbjct 354 TGGTTGTAGGTGGCTTTGACCTTGT--TCCGTTCTCCG--TGGGCCAACTGCCGCTCAAT 409 Query 28686 GATGTCCGGGCGGAAGTGCAGGACCTCGTCCAGAATGGTGCGAGCCGTCGCGCGGAAGCC 28745 | ||||| | | ||| ||||| ||||||||| ||| | |||||||| Sbjct 410 AACGTCCGTGTTCCACCCCAG---CTCGTGAAGAATGGTGGATGCCATGTGCCGGAAGCC 466 Query 28746 GTGGCCGGTCATCATCGTGCGGTCGTAA-CCCATGTTGCGCAGCGCTGCGGTAACGGCGT 28804 ||||| ||||| || | | ||| |||||| ||||||| || | | ||||| Sbjct 467 ATGGCCTGTCATT-TCTTCCTTGGGTATGCCCATGGTGCGCAGAGCCACAAGGATGGCGT 525 Query 28805 TCTCTGACATCGGGCGTTTGGAATCGCGGGCGCCAGAGAACACCCACTTGTGCCGGC--- 28861 | || ||| ||||| ||| || || | ||| || ||| ||| || Sbjct 526 TGTCGCTCATGGGGCGCTTGCTGCTTCGTGCCGAGGGGAATACATACT---GCCCGCTCC 582 Query 28862 CGGTGATCGGCTTGATGTCCTCCAGGATCTGCAGCGCCTGCCTGGACAGCGGCACCAGGT 28921 | || | |||||||||||| || | | || || || |||| ||||| || | || Sbjct 583 CTGTAAGGAGCTTGATGTCCTTGAGCAGCGCCACTGCTTGAGTGGAGAGCGGGACAATGT 642 Query 28922 GCGCAGCACGCATCTTCATCTTGCTGGCAGGGATGGTCCACACGGCCGCGTCGAGGTCGA 28981 | ||| ||||||||| || | |||| ||| ||| | || || || ||||||| Sbjct 643 GTCGTTCACCCATCTTCATTTTTTCGCCAGGAATGCGCCAGATAGCAGCATCAAGGTCGA 702 Query 28982 ACTCCTCCCATTCCGCATGCCGCAGTTCGCCAGGACGCAGGAACACCAGCGGCGCCAGCC 29041 |||| |||||| || |||||| | ||| ||||||| || |||| || ||||| | Sbjct 703 ACTCGGACCATTCGGCCGTCCGCAGGTTGCCCGGACGCACAAAAACCAAGGGGGCCAGAC 762 Query 29042 GCAGCGC 29048 |||| || Sbjct 763 GCAGTGC 769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128521135886968