Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq2234 120 3e-22 >seq2234 Length=154088 Score = 120 bits (132), Expect = 3e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 126898 TCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGA 126957 ||||| ||||| || | || || ||||| || ||||||||||| || || ||| Sbjct 11181 TCGCAGAACCAAGTGAAGAGTGGATTCTTTCTGGATATTGTAATCAGACAGAGTACGACC 11122 Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017 ||| || ||||||||||| ||| ||||||||| |||||| || ||||| ||||| || || Sbjct 11121 ATCTTCAAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGGTCTGGAGGGATGCCTTCTTT 11062 Query 127018 GTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| |||||| |||| | ||| | ||||| || || ||||| | || | Sbjct 11061 ATCCTGGATTTTTGTTTTGACATTTTCTATTGTGTCGCTAGGTTCAACTTCTAACGTTAT 11002 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || |||||||| ||||| || || ||||| Sbjct 11001 GGTCTTCCCTGTCAGAGTCTTTACGAATATTTGCAT 10966 Score = 109 bits (120), Expect = 5e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 126902 AACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCG 126961 || |||| ||| | ||||| ||||||||||| || ||||| || || || ||| Sbjct 12089 AAAACCAGATGCAGAGTAGATTCTTTTTGAATGTTATAATCCGACAGAGTACGGCCATCT 12030 Query 126962 TCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCC 127021 ||||| || || ||||| | || || ||||||||||| || || || || || |||||| Sbjct 12029 TCTAGTTGCTTACCAGCAAAAATTAAACGCTGCTGATCTGGGGGAATTCCTTCTTTGTCC 11970 Query 127022 GTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGT 127080 |||||| ||| || | | ||| | ||| || | |||||||| | || | || Sbjct 11969 TGGATTTT-TGCTTTAACATTTTCAATGGTATCACTTGGTTCGACTTCTAATGTAATTGT 11911 Query 127081 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 ||| || || ||||| ||||||||||| |||||| || Sbjct 11910 TTTACCTGTTAGAGTCTTTACAAAAATTTGCATGCCT 11874 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || |||||||| ||||||||||| | || || ||| || ||||| |||||| Sbjct 10934 GTGGATTCTTTTTGGATATTGTAATCTGAAAGAGTACGGCCATCTTCAAGCTGCTTTCCA 10875 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| | ||||||||| || || || ||||| || || || || ||| Sbjct 10874 GCAAAGATCAGCCTCTGCTGATCTGGTGGGATACCCTCTTTATCTTGAATCTTGGCCTTC 10815 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | ||||| ||||| || ||| ||||| | || | ||||| || |||||||| Sbjct 10814 ACATTTTCGATTGTGTCACTAGGCTCCACTTCAAGAGTGATGGTTTTTCCAGTCAGAGTC 10755 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 10754 TTCACAAAGATCTGCAT 10738 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || || |||||||| ||||| || | || | ||| || | ||||||||| Sbjct 10706 GTGGATTCCTTTTGAATGTTGTAGTCCGAGAGGGTTCTTCCATCTTCCAATTGTTTTCCA 10647 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||||||| || ||||| ||||| || || || |||||| || || ||| Sbjct 10646 GCAAAGATCAATCGTTGTTGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCCTTT 10587 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | ||| | ||| || || ||| || || | || | || |||||||| |||||| Sbjct 10586 ACATTTTCAATGGTATCACTAGGCTCAACCTCTAGAGTGATGGTCTTGCCGGTGAGAGTT 10527 Query 127097 TTTACAAAAATCTGCAT 127113 || |||||||||||||| Sbjct 10526 TTCACAAAAATCTGCAT 10510 Score = 87.8 bits (96), Expect = 2e-12 Identities = 142/202 (70%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||||||||| || |||||||| || || || ||| || |||||||| ||| Sbjct 12302 GTAGACTCTTTTTGGATGTTGTAATCCGACAGGGTACGCCCATCTTCAAGCTGTTTACCA 12243 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTG-CTT 127035 || | |||| | |||||||| || || ||||| || || | | ||| ||| || || Sbjct 12242 GCAAAAATCAGCCTTTGCTGATCTGGTGGAATGCCTTCTTTAT-CTTGAATTTTTGTTTT 12184 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 || | ||| | || || | || ||||| | ||| | || || || || || || Sbjct 12183 GACATTTTCAATTGTATCGCTTGGTTCTACTTCTAAGGTGATGGTCTTTCCAGTGAGGGT 12124 Query 127096 TTTTACAAAAATCTGCATGGCT 127117 ||| |||||||| |||||| || Sbjct 12123 TTTAACAAAAATTTGCATGCCT 12102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474429520472640