Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq2234 140 3e-28 seq8748 98.7 9e-16 seq929 82.4 7e-11 >seq2234 Length=154088 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || | |||||| | |||||||| || || ||||||||||| || || || || Sbjct 10739 ATACCACCTCTGAGCCTGAGAACTAGATGAAGTGTGGATTCCTTTTGAATGTTGTAGTCC 10680 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || |||| | ||| |||||||||||||| || | ||||||||||| || || || Sbjct 10679 GAGAGGGTTCTTCCATCTTCCAATTGTTTTCCAGCAAAGATCAATCGTTGTTGATCTGGA 10620 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| |||||||| || ||||| || || | ||| | ||| || || ||| Sbjct 10619 GGAATTCCTTCTTTGTCCTGAATCTTGGCCTTTACATTTTCAATGGTATCACTAGGCTCA 10560 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| | || |||||||| |||||||| |||||||| ||||| Sbjct 10559 ACCTCTAGAGTGATGGTCTTGCCGGTGAGAGTTTTCACAAAAATCTGCAT 10510 Score = 116 bits (128), Expect = 3e-21 Identities = 166/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | ||| || || || |||||||| || ||||| ||||| || |||||||| Sbjct 12107 ATGCCTCCTCTGAGTCTTAAAACCAGATGCAGAGTAGATTCTTTTTGAATGTTATAATCC 12048 Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| | | | ||| || | ||| || || || | || || || ||||| || | Sbjct 12047 --GACAGAGTACGGCCATCTTCTAGTTGCTTACCAGCAAAAATTAAACGCTGCTGATCTG 11990 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | ||||| |||||||| || || |||||| ||| | ||| | ||| || | | Sbjct 11989 GGGGAATTCCTTCTTTGTCCTGGATTTTTGCTTTAACATTTTCAATGGTATCACTTGGTT 11930 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||| | |||| ||||| || |||||||| ||||||||||||||||| Sbjct 11929 CGACTTCTAATGTAATTGTTTTACCTGTTAGAGTCTTTACAAAAATTTGCAT 11878 Score = 114 bits (126), Expect = 1e-20 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| ||||||||||| ||||||||||| |||||||| || || || ||||| || Sbjct 12647 ATGCCTCCTCGGAGCCTCAAGACTAGATGCAGAGTTGATTCTTTCTGAATGTTATAGTCC 12588 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | |||| ||| || | |||||| |||||| | || || | ||||| || || Sbjct 12587 GATAGGGTTCGGCCATCTTCAAGTTGTTTACCTGCGAAGATTAACCTCTGCTGATCTGGA 12528 Query 45231 GGAATGCCTTCTTTATCTTGAATTTT 45256 ||||| |||||||||||||||||||| Sbjct 12527 GGAATACCTTCTTTATCTTGAATTTT 12502 Score = 113 bits (124), Expect = 4e-20 Identities = 149/205 (73%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGTCCAATT 45195 || || || ||||| || |||||||| ||||| ||| | | || ||| || | | Sbjct 11168 TGAAGAGTGGATTCTTTCTGGATATTGTAATCA--GACAGAGTACGACCATCTTCAAGCT 11111 Query 45196 GTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTT 45255 ||||||| ||| | ||||||| |||||||| || || |||||||||||||| || |||| Sbjct 11110 GTTTTCCGGCGAAGATCAATCTCTGCTGGTCTGGAGGGATGCCTTCTTTATCCTGGATTT 11051 Query 45256 TTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGG 45315 || ||||| ||||| |||||| || || ||||| | || | || || || | Sbjct 11050 TTGTTTTGACATTTTCTATTGTGTCGCTAGGTTCAACTTCTAACGTTATGGTCTTCCCTG 10991 Query 45316 TTAGAGTTTTTACAAAAATTTGCAT 45340 | ||||| ||||| || |||||||| Sbjct 10990 TCAGAGTCTTTACGAATATTTGCAT 10966 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 |||||||| || || || || |||||||| || ||||| | ||| ||| || Sbjct 12314 ACTAGATGGAGTGTAGACTCTTTTTGGATGTTGTAATCCGACAGGGTACGCCCATCTTCA 12255 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | ||||| || || | |||| | |||||| || || ||||||||||||||||||||| Sbjct 12254 AGCTGTTTACCAGCAAAAATCAGCCTTTGCTGATCTGGTGGAATGCCTTCTTTATCTTGA 12195 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 |||||| ||||| ||| | || ||| | || ||||| | || | || || Sbjct 12194 ATTTTTGTTTTGACATTTTCAATTGTATCGCTTGGTTCTACTTCTAAGGTGATGGTCTTT 12135 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || ||||| |||||||||||||| Sbjct 12134 CCAGTGAGGGTTTTAACAAAAATTTGCAT 12106 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | | ||||| |||| ||| | || ||||| |||||||| || ||||| Sbjct 11651 ATACCTCCTCTCAACCTCAGAACTAAATGTAATGTAGATTCTTTTTGGATGTTGTAATCA 11592 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| ||||| || || || || | || | | || || || || Sbjct 11591 GAAAGAGTACGACCATCTTCCAACTGCTTACCAGCAAAAATTAGCCTCTGTTGATCTGGG 11532 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || |||||||| ||||||||||| ||||| ||||| ||||| || ||| Sbjct 11531 GGGATACCTTCTTTGTCTTGAATTTTGGCTTTGACGTTTTCTATTGTGTCACTAGGCTCT 11472 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | || | |||||||| ||||| ||||| || ||||||||||| Sbjct 11471 ACTTCCAAGGTGATGGTTTTGCCAGTTAGGGTTTTCACGAAAATTTGCAT 11422 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | |||||||| |||||||| || || ||||| || || || || || || Sbjct 11423 ATGCCTCCTCTAAGCCTCAAGACTAGATGTAGAGTAGATTCTTTCTGAATGTTGTAGTCC 11364 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| || | ||| || || || | ||||| || || ||||| || Sbjct 11363 GATAGAGTACGGCCATCTTCTAGTTGCTTACCAGCAAAAATCAAACGCTGTTGGTCTGGG 11304 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| |||||||||||||| |||||| |||| ||||| |||||| || || Sbjct 11303 GGAATACCTTCTTTATCTTGGATTTTTGTCTTGACATTTTCTATTGTGTCGCTAGGTTCA 11244 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| | || | || || || || | |||||| ||||| |||||||| Sbjct 11243 CTTTCTAAGGTTATGGTCTTCCCTGTCAAAGTTTTGACAAATATTTGCAT 11194 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACG--GTTTTAGAATCGTCCAATT 45195 || || || |||||||| |||||||||||||| |||| ||| | ||| || | || Sbjct 12848 TGTAGAGTAGATTCCTTCTGGATATTATAATC--TGACAAAGTTCTGCCATCTTCAAGTT 12791 Query 45196 GTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTT 45255 |||| || || | || || | ||||| || || ||||| ||||||||||| || |||| Sbjct 12790 GTTTACCAGCAAAGATTAACCTCTGCTGATCTGGGGGAATACCTTCTTTATCCTGGATTT 12731 Query 45256 TTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGG 45315 | ||| | || | || || || || ||||| | || | |||||||| | Sbjct 12730 TGGCTTTCACATTCTCAATTGTATCACTAGGTTCAACTTCTAAGGTGATGGTTTTGCCAG 12671 Query 45316 TTAGAGTTTTTACAAAAATTTGCAT 45340 | || ||||| |||||||||||||| Sbjct 12670 TCAGGGTTTTAACAAAAATTTGCAT 12646 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | || ||||| || | || || ||||||||||||||||| || || || Sbjct 11879 ATGCCTCCTCTTAGTCTCAAGACCAAGTGAAGGGTTGATTCCTTTTGGATGTTGTAGTCC 11820 Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| | | | ||| || | || || || || | || |||||||| || || | Sbjct 11819 --GACAGAGTACGTCCATCTTCTAGCTGCTTGCCCGCAAAGATTAATCGTTGTTGATCAG 11762 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | || || ||||| |||||||||||||| ||||| ||| | || || | || Sbjct 11761 GAGGGATACCTTCCTTATCTTGAATTTTAGCTTTGACATTTTCAATTGTATCACTTGGCT 11702 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | ||||| || |||| || || || || |||||||| || || |||||||| Sbjct 11701 CAACTTCTAGTGTAATTGTCTTCCCAGTAAGAGTTTTGACGAAGATTTGCAT 11650 >seq8748 Length=68017 Score = 98.7 bits (108), Expect = 9e-16 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 123587 TATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAA 123646 |||||| ||| | ||||| ||||||||||| || |||||| | ||||| || || || || Sbjct 33119 TATTATTGAATCGCAAGTTGAAACCGGAACACCTTACATGTTATACAAGGATGCTTGTAA 33060 Query 123647 CAGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAAT 123706 |||||| | ||||| | || ||||||||||| | ||||| ||| | || | ||||| Sbjct 33059 TAGGAAATCAAATCAAAAGAATTTGGGAACAATTCAGTGTAGCAATTTGTGTACAGAAAT 33000 Query 123707 TATCGAATA 123715 | | ||||| Sbjct 32999 TGTTGAATA 32991 >seq929 Length=218852 Score = 82.4 bits (90), Expect = 7e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 123606 GAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGC 123665 || || |||| || | |||||||||||||||| ||||||| | ||| | || || || Sbjct 85776 GAGACAGGAAACCCTTTCATGCTCTACAAAGACACCTGCAATCGCAAATCAAACCAAAGG 85835 Query 123666 AACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAG 123718 ||||||| ||||| ||| | |||||||| ||| | ||| | || || ||||| Sbjct 85836 CACTTGGGGACAATCAAAGGCAGTAATCTGTGCACTGAAGTGATTGAGTACAG 85888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450984859390560