Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq71469 96.9 4e-15 seq12046 93.3 5e-14 seq14 84.2 3e-11 seq7 82.4 9e-11 >seq71469 Length=5065 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 176306 TGGAGAATAGGAGACTCGAACTCCTGACAGCCTGCTTGCAAAGCAGGTGCTCTACCAACT 176365 |||||| ||||||| ||||||||||||| ||||| ||||||||||| |||||||||||| Sbjct 4914 TGGAGACTAGGAGAGTCGAACTCCTGACCTCCTGCGTGCAAAGCAGGCGCTCTACCAACT 4973 Query 176366 GAGCTAATTCCCC 176378 |||||| ||||| Sbjct 4974 AAGCTAAGTCCCC 4986 >seq12046 Length=50888 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 32020 GTAGGATTCGAACCTACGACCGACTGCTTAGAAGGCAGTTGCTCTATCCAGCTGAGCTA 32078 ||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||| Sbjct 7049 GTAGGATTCGAACCTACGACCCACAGCTTAGAAGGCTGTTGCTCTATCCAGCTGAGCTA 6991 >seq14 Length=669857 Score = 84.2 bits (92), Expect = 3e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 176378 CTGGAGCCACAAGTCGGACTTGAACCGACGACCTACGGTTTACAAAACCGTTGCTCTATC 176437 |||| ||| | || ||||||||||||| ||||| | ||||||||||| | ||||||| | Sbjct 64105 CTGGTGCCCCCAGACGGACTTGAACCGCCGACCGTCAGTTTACAAAACTGCTGCTCTA-C 64047 Query 176438 CAGCTGAGCTATAGTGGC 176455 |||||||||||||| ||| Sbjct 64046 CAGCTGAGCTATAGGGGC 64029 >seq7 Length=747525 Score = 82.4 bits (90), Expect = 9e-11 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 32021 TAGGATTCGAACCTACGACCGACTGCTTAGAAGGCAGTTGCTCTATCCAGCTGAGCTA 32078 ||||||||||||||| |||| || ||||||||||| ||||||||||||| |||||||| Sbjct 439854 TAGGATTCGAACCTATGACCCACGGCTTAGAAGGCCGTTGCTCTATCCAACTGAGCTA 439911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620723183931840