Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq68 118 1e-21 seq18350 107 2e-18 seq8748 91.5 2e-13 seq51 87.8 2e-12 seq57698 82.4 9e-11 >seq68 Length=444459 Score = 118 bits (130), Expect = 1e-21 Identities = 441/671 (66%), Gaps = 38/671 (6%) Strand=Plus/Plus Query 12545 CTCATTGAGGAGGTTCGCCAAGTCGGCACCAGAGAAGCCCGTCGTTTGCTTTGCG--ATG 12602 ||| || | ||||||| | ||| || || || ||||||| ||| || ||| ||| Sbjct 24765 CTCGTTCACGAGGTTCATGAGGTCAGCGCCCGAAAAGCCCGGCGT--GCCGCGCGCAATG 24822 Query 12603 GCGTGTAGCTTCACATCGTCAGCCAA----CTTCTTGTCTCGGGCGTGGACACCCAAAAT 12658 | | | || | ||||||| ||||| | |||| |||||||| || || || Sbjct 24823 GTGCGCAGGTCCACATCGGG-GCCAAGCGGCACCTTG---CGGGCGTGCACGGTCAGGAT 24878 Query 12659 CTTCTCGCGTCCGCGCACA-CTGGGTAGGGACACGGTGATCTTACGATCAAAGCGACCTG 12717 ||||||||| || | | |||| || ||| ||||| || || ||||| || | Sbjct 24879 CTTCTCGCGGCCCTTGATGTCGGGGTTCGG-CACATGGATCTGGCGGTCGAAGCGGCCGG 24937 Query 12718 GGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGC 12777 |||| || || || ||| || | ||| | ||||| |||||||||| || | | | Sbjct 24938 GGCGCAGCAGCGCCGGGTCCAGCACATCCTTACGGTTGGTCGCCGCGACGATGATCACAC 24997 Query 12778 CCGTCTCGTTA---TCGAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCAC 12834 | || || ||||| || |||||||| || || || || | || ||||| | Sbjct 24998 CT---TCATTTGCCTCGAACCCGTCCATCTCGACCAGAAGCTGGTTCAGTGTCTGTTCGC 25054 Query 12835 GTTCATCATT--CGCGGGC-ATACC-AC-CCGCACTGCGTTGCTTACCGACGGCGTCAAT 12889 |||| ||||| ||| | | ||||| || |||| | || || | |||||||| || Sbjct 25055 GTTCGTCATTGCCGCCGCCGATACCCACGCCGCGC-GCACGGC----CCACGGCGTCGAT 25109 Query 12890 TTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCAC 12949 ||||| || || ||||| || || ||| | ||| ||| || || || ||||| Sbjct 25110 CTCGTCGATAAACACGATGCAAGGCGCATTCTTCTTGGCCTGTTCGAACATGTCGCGCAC 25169 Query 12950 TCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGA 13008 | |||||||| || || ||||| ||||| || | || | || || | || || Sbjct 25170 ACGGGATGCACCGACCCCAACGAACATTTCCACGAAGTCGGAACCCGAG-ATGGTGAAGA 25228 Query 13009 AGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTT 13068 | || ||| | |||||||||||||| || ||||| ||||| || ||||| || || Sbjct 25229 ACGGCACGCCCGCCTCACCCGCGATGGCGCGCGCGAGCAGGGTTTTACCCGTGCCGGGGG 25288 Query 13069 TCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACC---ACTTCCAAAGTAGCGCTCGG 13125 || | || || ||||| |||||| || | || || ||| | | ||| Sbjct 25289 GACCGACCAGCAGCGCACCTTTGGGGATCTTGCCGCCGAGACGCGAAAACTTCTG--CGG 25346 Query 13126 GTTGTTTAAGAAAGTCCACGATTTCTTCCAATTCATCCTTCGCGGCGTCGATGCCTTCAA 13185 |||| || || || ||||| ||||||| || ||||| || |||||||||| | | Sbjct 25347 GTTG-CGCAGGAATTCGACGATCTCTTCCAGCTCTTCCTTGGCCTCGTCGATGCCGGCCA 25405 Query 13186 CGTCACTGAAG 13196 ||||| |||| Sbjct 25406 CGTCATCGAAG 25416 >seq18350 Length=31362 Score = 107 bits (118), Expect = 2e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 140605 CCTGGTTGCGGGAAGTTCCTTAGAGCTCTAACTACCACCCCCATTTGGAAACTTTTGGGG 140664 ||| |||||||||||| ||| ||||||| || |||| | | |||||||||||| | | | Sbjct 2596 CCTTGTTGCGGGAAGTCCCTGAGAGCTCAGACGACCATCTCTATTTGGAAACTTATAGAG 2537 Query 140665 GGATCTCGGTTAATTACCGAACCCGATGGTAAAAAGGTTAGAGATTGGATAATCCGCAGG 140724 || | ||| |||| |||| || |||||||||| || |||||||| |||||| |||| Sbjct 2536 AGAACCCGGGTAATGACCGGCTCCAATGGTAAAAACGTCTGAGATTGGGTAATCCTCAGG 2477 Query 140725 CGAGAACCTACGTTCGC 140741 ||| |||| ||| || Sbjct 2476 TGAGTTCCTAAGTTAGC 2460 >seq8748 Length=68017 Score = 91.5 bits (100), Expect = 2e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 116472 AGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTG 116531 ||| || || | |||||| ||||||||||| || || ||| || ||||| |||||||| Sbjct 32987 AGTATATTCAACAATTTCTGTACACAAATTGCTACACTGAATTGTTCCCAAATTCTTTTG 33046 Query 116532 ATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTG 116591 |||||| || | ||||| ||||||||||| | ||| || || || || || || ||| Sbjct 33047 ATTTGATTTCCTATTACAAGCATCCTTGTATAACATGTAAGGTGTTCCGGTTTCAACTTG 33106 Query 116592 GGACTTGAGAATAGC 116606 || | | |||||| Sbjct 33107 CGATTCAATAATAGC 33121 >seq51 Length=473680 Score = 87.8 bits (96), Expect = 2e-12 Identities = 234/352 (66%), Gaps = 18/352 (5%) Strand=Plus/Plus Query 12645 TGGACACCCAAAATCTTCTCGCGTCCGCGCACACTGGGTAGGGACACGGTGATCTTACGA 12704 ||||| || ||| | ||| || || |||||| || | | ||| || || ||| Sbjct 102551 TGGACTTTCAGAATATGCTCACGGCCACGCACATCTGGCAAGCCCACAACGACCTGACGG 102610 Query 12705 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 12764 || ||||||||||| || | | ||| | || | | ||| ||||| || || ||| Sbjct 102611 TCGAAGCGACCTGGACGTAATAAGGCAGCATCCAATACATCCGGACGGTTGGTGGCGGCG 102670 Query 12765 ATGACAACGATGCCCGTCTCGTTA---TCGAAGCCATCCATCTCAGTCAAGAGTTGATTG 12821 || | || || || || ||| |||||||| ||||||||| || | || || Sbjct 102671 ATAATAATAATACCT---TCATTACCATCGAAGCCGTCCATCTCAACCAGCATCTGGTTT 102727 Query 12822 ATGGTTTGTTCACGTTCATCATTCGCGGGCAT-ACC---ACCCGCACTGCGTTGCTTACC 12877 | |||||| ||||| ||||||| || || ||| ||| || | || ||| || Sbjct 102728 AAGGTTTGCTCACGCTCATCAT----GGCCACCACCTAAACCGGCGCCACGCTGCCGGCC 102783 Query 12878 GACGGCGTCAATTTCGTCAATGAAAACGATACACGGTT--GATTTTCACGGGCAACTTCA 12935 ||||||||||| || || || || | || || ||| | |||| ||| || Sbjct 102784 TACGGCGTCAATCTCATCGATAAAGATAATGCAAGGTGCCGCTTTTTT--GGCTTGCTCG 102841 Query 12936 AAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAAT 12987 || || || ||||| | | |||||||||||| |||||||| || ||||||| Sbjct 102842 AACATGTCGCGCACCCGCGAGGCACCGACACCGACAAACATTTCAACAAAAT 102893 >seq57698 Length=6283 Score = 82.4 bits (90), Expect = 9e-11 Identities = 199/294 (68%), Gaps = 18/294 (6%) Strand=Plus/Minus Query 12701 ACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGC 12760 ||| ||||| |||||||| || || | || | ||||| | ||| | |||||| ||||| Sbjct 5068 ACGGTCAAAACGACCTGGACGAAGTAATGCTTTATCAAGAACATCTACGCGGTTAGTCGC 5009 Query 12761 CGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAG-AGTTGAT 12819 || || || | | ||| | | || || |||||||||||| |||| | ||| | Sbjct 5008 AGCAATAACGATAACGCCTTCATTGCCTTCAAAACCATCCATCTCA-ACAAGCATTTGGT 4950 Query 12820 TGATGGTTTGTTCACGTTCATCATTCGCGGGCA-TACC---ACCCGCACTGCGTTGCTTA 12875 | | |||||| ||||| ||||||| | || ||| ||| | || || || | Sbjct 4949 TTAAGGTTTGCTCACGCTCATCAT----GACCACCACCAGTACCTGAACCACGATGACGA 4894 Query 12876 CCGACGGCGTCAATTTCGTCAATGAAAACGATACA---CGGTTGA-TTTTCACGGGCAAC 12931 || || || ||||| || ||||| || | |||||| || ||| |||| || Sbjct 4893 CCAACAGCATCAATCTCATCAATAAAGATGATACAAGGCGCATGACGTTTC----GCTTG 4838 Query 12932 TTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 12985 |||||| ||||| || || | | ||||| ||||| || ||||| || ||||| Sbjct 4837 TTCAAACATATCACGAACACGCGATGCACCTACACCAACGAACATTTCGACAAA 4784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 612124998953760