Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq2234 127 5e-24 >seq2234 Length=154088 Score = 127 bits (140), Expect = 5e-24 Identities = 163/224 (73%), Gaps = 3/224 (1%) Strand=Plus/Minus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 || || || || || || || || || |||||||| | ||||||||| | | || ||| Sbjct 10727 AGCCTGAGAACTAGATGAAGTGTGGATTCCTTTTGAATGTTGTAGTCCGAGAGGGTTCTT 10668 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 |||||||||| || ||||| || ||||| | || || || || ||| |||||||||| Sbjct 10667 CCATCTTCCAATTGTTTTCCAGCAAAGATCAATCGTTGTTGATCTGGAGGAATTCCTTCT 10608 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 ||||||||||| ||| || ||| | ||| || | | || || || | ||| Sbjct 10607 TTGTCCTGAATCTTGGCCTTTACATTTTCAATGGTATCACTAGGCTCAACCTCTAGAGTG 10548 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 || ||||| || |||||||||||||||||||| || |||||| Sbjct 10547 ATGGTCTTGCCGGTGAGAGTTTTCACAAAAATCTG---CATTTT 10507 Score = 125 bits (138), Expect = 2e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 || ||||| ||| || | ||| ||||| || || || |||| ||||| |||| || ||| Sbjct 11187 TCTAAGTCGCAGAACCAAGTGAAGAGTGGATTCTTTCTGGATATTGTAATCAGACAGAGT 11128 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | |||||||| ||||| |||||||||||||| | | ||||||||| ||| || || Sbjct 11127 ACGACCATCTTCAAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGGTCTGGAGGGATGCC 11068 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| ||||| || ||| || || ||| | ||||| | | ||| || || || Sbjct 11067 TTCTTTATCCTGGATTTTTGTTTTGACATTTTCTATTGTGTCGCTAGGTTCAACTTCTAA 11008 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || ||||| || || ||||| || || || ||||| Sbjct 11007 CGTTATGGTCTTCCCTGTCAGAGTCTTTACGAATATTTG 10969 Score = 118 bits (130), Expect = 2e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||| || || || ||||| || ||||| ||||||| |||||| || | || || | || Sbjct 12321 TCTGAGAACTAGATGGAGTGTAGACTCTTTTTGGATGTTGTAATCCGACAGGGTACGCCC 12262 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||| ||||| || || || || || || | ||||| || || ||| |||||| Sbjct 12261 ATCTTCAAGCTGTTTACCAGCAAAAATCAGCCTTTGCTGATCTGGTGGAATGCCTTCTTT 12202 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || ||||| ||| || || ||| | || || ||| |||||| || || ||||| Sbjct 12201 ATCTTGAATTTTTGTTTTGACATTTTCAATTGTATCGCTTGGTTCTACTTCTAAGGTGAT 12142 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || ||||| ||||| ||||||||||| Sbjct 12141 GGTCTTTCCAGTGAGGGTTTTAACAAAAATTTG 12109 Score = 116 bits (128), Expect = 9e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 ||||| | || || || ||||| || || ||||| | ||| || || | || ||| | Sbjct 12095 AGTCTTAAAACCAGATGCAGAGTAGATTCTTTTTGAATGTTATAATCCGACAGAGTACGG 12036 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 |||||||| || ||||| || || || || | ||||||||| || || |||||||||| Sbjct 12035 CCATCTTCTAGTTGCTTACCAGCAAAAATTAAACGCTGCTGATCTGGGGGAATTCCTTCT 11976 Query 199532 CGCTCCTGAATCTTTTGCTTCA-CGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGT 199590 ||||| || |||||||| | | ||| | ||| || ||| ||| || || || || Sbjct 11975 TTGTCCTGGAT-TTTTGCTTTAACATTTTCAATGGTATCACTTGGTTCGACTTCTAATGT 11917 Query 199591 GATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || ||||| || ||||||||||| Sbjct 11916 AATTGTTTTACCTGTTAGAGTCTTTACAAAAATTTG 11881 Score = 109 bits (120), Expect = 1e-18 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 |||| || || ||||| ||||| || || ||||||| ||||| || | | ||| | Sbjct 10955 AGTCGGAGAACCAGGTGAAGAGTGGATTCTTTTTGGATATTGTAATCTGAAAGAGTACGG 10896 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 |||||||| ||||||||||| || ||||| || | |||||| || || || || ||| Sbjct 10895 CCATCTTCAAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCTGGTGGGATACCCTCT 10836 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 || |||||||| |||||| ||||| ||||| | | || || || | ||| Sbjct 10835 TTATCTTGAATCTTGGCCTTCACATTTTCGATTGTGTCACTAGGCTCCACTTCAAGAGTG 10776 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||| |||||||| || || Sbjct 10775 ATGGTTTTTCCAGTCAGAGTCTTCACAAAGATCTG 10741 Score = 98.7 bits (108), Expect = 2e-15 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 199415 CTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCA 199474 || || || | ||| ||||| || ||||| |||| || || || | |||||| || ||| Sbjct 12860 CTGAGAACCAAGTGTAGAGTAGATTCCTTCTGGATATTATAATCTGACAAAGTTCTGCCA 12801 Query 199475 TCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGC 199534 ||||| || || || || || ||||| | | |||||| || || ||| |||||| Sbjct 12800 TCTTCAAGTTGTTTACCAGCAAAGATTAACCTCTGCTGATCTGGGGGAATACCTTCTTTA 12741 Query 199535 TCCTGAATCTTTTGCTT-CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 ||||| || ||| |||| ||| || | || || | | ||| || || || ||||| Sbjct 12740 TCCTGGAT-TTTGGCTTTCACATTCTCAATTGTATCACTAGGTTCAACTTCTAAGGTGAT 12682 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||| ||||||||||| Sbjct 12681 GGTTTTGCCAGTCAGGGTTTTAACAAAAATTTG 12649 Score = 96.9 bits (106), Expect = 8e-15 Identities = 108/143 (76%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||||| || | ||| ||||| |||||||| || | || ||||||| || || Sbjct 13458 CGAAGTCTCAAAACCAAGTGTAGAGTAGACTCCTTCTGAATATTATAGTCAGACAGGGTT 13399 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 ||||||||||||| ||| || || || ||||||||||| || || || || |||||| Sbjct 13398 CTTCCATCTTCCAACTGTTTACCAGCAAAGATGAGACGTTGTTGATCTGGTGGTATTCCT 13339 Query 199529 TCTCGCTCCTGAATCTTTTGCTT 199551 || || || ||| ||||||| Sbjct 13338 TCCTTGTCTTGGATC-TTTGCTT 13317 Score = 87.8 bits (96), Expect = 4e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 |||||||||||||| ||| | |||||||| | ||| || | |||||||| |||||||| Sbjct 11095 ATCTTCGCCGGAAAACAGCTTGAAGATGGTCGTACTCTGTCTGATTACAATATCCAGAAA 11154 Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 201030 || || ||||||||| | ||| || ||||| || Sbjct 11155 GAATCCACTCTTCACTTGGTTCTGCGACTTAGA 11187 Score = 86.0 bits (94), Expect = 1e-11 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 || ||||| || || || ||||||||||||||||| || || | || || || | ||| Sbjct 13364 CTCATCTTTGCTGGTAAACAGTTGGAAGATGGAAGAACCCTGTCTGACTATAATATTCAG 13423 Query 200995 AAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 || ||||||||||| ||| | |||||||||||||| Sbjct 13424 AAGGAGTCTACTCTACACTTGGTTTTGAGACTTCG 13458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1176199147295812