Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq38288 134 1e-26 seq2234 129 6e-25 >seq38288 Length=11396 Score = 134 bits (148), Expect = 1e-26 Identities = 402/614 (65%), Gaps = 16/614 (3%) Strand=Plus/Plus Query 132870 TTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGA 132929 |||||| |||| ||||||| || ||||| || || || | || || || | Sbjct 7646 TTGCACATAATGATTGAACAAGTGACAGGCAAAATCCCAGTGTAGTCCTTCATCTCGACT 7705 Query 132930 AATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATAT 132989 || | | |||||| || || || || ||||| | | ||||| || | |||||| || Sbjct 7706 CATCAACTTGTTGCTAAACGTTAATCCAGGCATTAATTCCCGTTTCTTTAACCAAAAAAT 7765 Query 132990 GGCGGCGAAACTG--CCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGC 133047 || ||||| | || || || |||| || || || || || || ||||||| || Sbjct 7766 AGC--CGAAAAGGAACCTGAGAAAAAGATTCCTTCCACAGCGGCAAAGGCCACCAACCGT 7823 Query 133048 TCGCCGAACG-TGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTT 133106 | | || | ||| || | | ||||| | |||||||| ||||||| || Sbjct 7824 TTTGCAAAAGATGGATTTTGT-------ATCCAATTTAATGCCCATTCTGCCTTTTTCTT 7876 Query 133107 GACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCAC 133166 | ||| | | ||||| |||||||| ||||| ||| |||| || || | || Sbjct 7877 AAAGCAGGAAAGGGTTTCAATGGCGTTAAACAATTTATTTTTTTCTT--GATGATCTCAA 7934 Query 133167 GT-AGG-TGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGA 133224 | ||| | || || || |||||||| || |||| || || ||||| || ||| Sbjct 7935 ATGAGGATCTCAATCAGCAAGCTGTACATTTCTGAATGTATATTTTCAATGGCAATCTGA 7994 Query 133225 AAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGA 133284 ||||| |||||||| || | ||| ||| | ||||| ||||||| || || || | | Sbjct 7995 AAGCCATAAAAGCAACGAACTTCGGTCACTTTGACTTCGCGAGCGAAGCGTTCCACTAAA 8054 Query 133285 TTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGG 133344 ||||| | || || || || |||||||| ||||||||||| || || | ||||| Sbjct 8055 TTTTCAATTACAATACCATCACTGGCGGCAAAAAAGGCCAGAACATGGGAAAGAAAATGC 8114 Query 133345 CGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCG 133404 | | | | | | || | ||||| || | | || ||||||| ||||| || || Sbjct 8115 CATTTATCGGGGGTTAATCTTTCCCAATCTCCCCCATCTTTGGACAAATCCACTTCTTCT 8174 Query 133405 ACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAATATTGTATG 133464 | ||||| || || || | || |||||||||| ||||| ||| | | | | | | Sbjct 8175 GCCGTCCAGAAGGAAGCGACAGCCTTTTTGTACAAGAGCCACAAATCCAAGTGTAGAAGG 8234 Query 133465 GGAAAAATCACAAA 133478 ||||| | ||||| Sbjct 8235 GGAAATGTGACAAA 8248 >seq2234 Length=154088 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| || || ||||||||||||||| | || || ||| | | Sbjct 11422 ATGCAAATTTTCGTGAAAACCCTAACTGGCAAAACCATCACCTTGGAAGTAGAGCCTAGT 11481 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | ||||| | |||| ||||| | |||||||| || || ||| | || || Sbjct 11482 GACACAATAGAAAACG-TCAAAGCCAAAATTCAAGACAAAGAAGGTATCCCCCCAGATCA 11540 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||| |||| |||| || || || ||| |||| || | || || || || ||||| Sbjct 11541 ACAGAGGCTAATTTTTGCTGGTAAGCAGTTGGAAGATGGTCGTACTCTTTCTGATTACAA 11600 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| ||| | || | ||||| || ||| | |||||||| || Sbjct 11601 CATCCAAAAAGAATCTACATTACATTTAGTTCTGAGGTTGAGAGGAGG 11648 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| ||||| || || ||||||||| | || || || | | | Sbjct 12106 ATGCAAATTTTTGTTAAAACCCTCACTGGAAAGACCATCACCTTAGAAGTAGAACCAAGC 12165 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | ||| | ||| |||||| | || ||||| || ||||| | || || Sbjct 12166 GATACAATTGAAAATGTCAAAACAAAAATTCAAGATAAAGAAGGCATTCCACCAGATCAG 12225 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || |||| |||| || || |||||||| || || | ||| ||||| || |||||| Sbjct 12226 CAAAGGCTGATTTTTGCTGGTAAACAGCTTGAAGATGGGCGTACCCTGTCGGATTACAAC 12285 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| || | || || ||| | || || | || ||||| || Sbjct 12286 ATCCAAAAAGAGTCTACACTCCATCTAGTTCTCAGATTAAGAGGAGG 12332 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||||||||||||||| || || || || || ||||| || | || || || | | Sbjct 10965 AATGCAAATATTCGTAAAGACTCTGACAGGGAAGACCATAACGTTAGAAGTTGAACCTAG 11024 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||||| | ||| | ||| |||||||| || ||||| || || || | ||||| Sbjct 11025 CGACACAATAGAAAATGTCAAAACAAAAATCCAGGATAAAGAAGGCATCCCTCCAGACCA 11084 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | | || | ||| || |||||||| || || | || || || || ||||| Sbjct 11085 GCAGAGATTGATCTTCGCCGGAAAACAGCTTGAAGATGGTCGTACTCTGTCTGATTACAA 11144 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| || ||| | || || || ||||| ||||| | ||||| || Sbjct 11145 TATCCAGAAAGAATCCACTCTTCACTTGGTTCTGCGACTTAGAGGAGG 11192 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || || || ||||| ||||| ||||| |||||||| | || || ||| | Sbjct 10507 AAAATGCAGATTTTTGTGAAAACTCTCACCGGCAAGACCATCACTCTAGAGGTTGAGCCT 10566 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | || | | | ||| | || | || || | |||||||| |||||||| | || Sbjct 10567 AGTGATACCATTGAAAATGTAAAGGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGAT 10626 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 ||||| || | || | || || ||||| |||| || | | |||||| |||||| Sbjct 10627 CAACAACGATTGATCTTTGCTGGAAAACAATTGGAAGATGGAAGAACCCTCTCGGACTAC 10686 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 ||||| ||||||||| | || || ||| | || || Sbjct 10687 AACATTCAAAAGGAATCCACACTTCATCTAGTTCT 10721 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| || || || || || || || | || || ||| | | Sbjct 11650 ATGCAAATCTTCGTCAAAACTCTTACTGGGAAGACAATTACACTAGAAGTTGAGCCAAGT 11709 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | ||| | |||| ||||| | || || || || || || | || ||| Sbjct 11710 GATACAATTGAAAATGTCAAAGCTAAAATTCAAGATAAGGAAGGTATCCCTCCTGATCAA 11769 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | || | |||||||| ||||| || || | || || || ||||||||| Sbjct 11770 CAACGATTAATCTTTGCGGGCAAGCAGCTAGAAGATGGACGTACTCTGTCGGACTACAAC 11829 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||||||| | || || || ||||| || | | ||||| ||| Sbjct 11830 ATCCAAAAGGAATCAACCCTTCACTTGGTCTTGAGACTAAGAGGAGGC 11877 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| || || ||||||||||||||| | || || || | | Sbjct 12646 ATGCAAATTTTTGTTAAAACCCTGACTGGCAAAACCATCACCTTAGAAGTTGAACCTAGT 12705 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | |||| ||||||| || ||||| || |||||| | || || Sbjct 12706 GATACAATTGAGAATGTGAAAGCCAAAATCCAGGATAAAGAAGGTATTCCCCCAGATCAG 12765 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | || | || || ||||| || || || | | || | || || || Sbjct 12766 CAGAGGTTAATCTTTGCTGGTAAACAACTTGAAGATGGCAGAACTTTGTCAGATTATAAT 12825 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| |||||| | || || || ||||| || | |||||||| ||| Sbjct 12826 ATCCAGAAGGAATCTACTCTACACTTGGTTCTCAGGTTGAGAGGAGGC 12873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499045935690240