Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1973 159 4e-34 seq57698 123 3e-23 seq68 104 3e-17 >seq1973 Length=162522 Score = 159 bits (176), Expect = 4e-34 Identities = 291/416 (70%), Gaps = 20/416 (5%) Strand=Plus/Plus Query 11502 ACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGC 11561 ||| || ||||||||||| || |||| ||| | ||| | | ||| ||||||||||| || Sbjct 27188 ACGGTCAAAACGACCTGGACGAAGTAAAGCTTTATCCAATACATCTACACGGTTTGTGGC 27247 Query 11562 GGCAATGACTACAATGCCAGTCTCATTG---TCGAAACCGTCCATTTCTGTGAGAAGCTG 11618 ||||| ||| || || |||||| |||||||||||||| ||| || | || Sbjct 27248 AGCAAT---TACGATCACACCTTCATTGCCTTCGAAACCGTCCATCTCTACAAGCATTTG 27304 Query 11619 GTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACC---ACCTGCCGAACGCTTCTT 11675 ||| | || |||||||| ||||| | || || ||| ||||| ||| | Sbjct 27305 GTTCAAGGTTTGTTCACGTTCATCAT--GACCGCC-ACCTGTACCTGAACCACGATGACG 27361 Query 11676 ACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGT---GCCTG 11732 ||| ||||| ||||||||||| ||||| | |||||| ||| | || |||| || || Sbjct 27362 ACCTACAGCATCAATCTCATCAATGAAAATGATACATGGT-GCATG--ACGTTTAGCTTG 27418 Query 11733 TTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGC 11792 |||||| | ||||| ||||| || |||||||| || ||||| |||||||| | | Sbjct 27419 TTCGAACATATCACGAACACGAGAAGCACCAACACCAACAAACATTTCAACGAAATCAGA 27478 Query 11793 GGCAGAAC-ACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAG 11851 ||||| ||| || ||| ||||| |||| |||||||| || ||| || | | | Sbjct 27479 ACCAGAAATACTAAA-GAAAGGAACTTTAGCTTCACCAGCAATTGCTTTGGCTAATAATG 27537 Query 11852 TCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCA 11907 | ||||||||||| || | |||| | | | | ||||| || || | |||||| Sbjct 27538 TTTTACCCGTACCTGGAGGACCAACCATTAACACACCACGTGGAATAGTTGCACCA 27593 >seq57698 Length=6283 Score = 123 bits (136), Expect = 3e-23 Identities = 259/376 (69%), Gaps = 20/376 (5%) Strand=Plus/Minus Query 11502 ACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGC 11561 ||| || ||||||||||| || |||| || | |||||||| ||| || ||||| || || Sbjct 5068 ACGGTCAAAACGACCTGGACGAAGTAATGCTTTATCAAGAACATCTACGCGGTTAGTCGC 5009 Query 11562 GGCAATGACTACAATGCCAGTCTCATTG---TCGAAACCGTCCATTTCTGTGAGAAGCTG 11618 ||||| || | || ||| |||||| || ||||| ||||| || || | || Sbjct 5008 AGCAATAACGATAACGCCT---TCATTGCCTTCAAAACCATCCATCTCAACAAGCATTTG 4952 Query 11619 GTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCA---CCTGCCGAACGCTTCTT 11675 ||| | || || ||||||||||| | || | |||| |||| ||| | Sbjct 4951 GTTTAAGGTTTGCTCACGCTCATCAT--GACCACC-ACCAGTACCTGAACCACGATGACG 4895 Query 11676 ACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGT---GCCTG 11732 ||| ||||| ||||||||||| || || | |||||| || | || |||| || || Sbjct 4894 ACCAACAGCATCAATCTCATCAATAAAGATGATACAAGG-CGCATG--ACGTTTCGCTTG 4838 Query 11733 TTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGC 11792 ||| || | ||||| |||||| || || ||||| |||||||| || || |||| | Sbjct 4837 TTCAAACATATCACGAACACGCGATGCACCTACACCAACGAACATTTCGACAAAGTCAGA 4778 Query 11793 GGCAGA-ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAG 11851 |||| | |||||| ||| || || |||| |||||||| || ||| || | | | Sbjct 4777 ACCAGAGATACTGAA-GAAAGGTACTTTAGCTTCACCAGCAATTGCTTTTGCTAATAATG 4719 Query 11852 TCTTACCCGTACCAGG 11867 | ||||| ||||| || Sbjct 4718 TTTTACCTGTACCTGG 4703 >seq68 Length=444459 Score = 104 bits (114), Expect = 3e-17 Identities = 331/502 (66%), Gaps = 20/502 (4%) Strand=Plus/Plus Query 11490 CACCTGAATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGAC 11549 ||| || |||| || ||||| || || ||||| || || || || || | ||| Sbjct 24909 CACATGGATCTGGCGGTCGAAGCGGCCGGGGCGCAGCAGCGCCGGGTCCAGCACATCCTT 24968 Query 11550 ACGGTTTGTAGCGGCAATGACTACAATGCCAGTCTCATTG---TCGAAACCGTCCATTTC 11606 |||||| || || || ||| | || || ||||| ||||| |||||||| || Sbjct 24969 ACGGTTGGTCGCCGC---GACGATGATCACACCTTCATTTGCCTCGAACCCGTCCATCTC 25025 Query 11607 TGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAG-GGC--ATACCACCTGC 11663 ||||||||||| | |||||||| || || || ||| | || ||||| | || Sbjct 25026 GACCAGAAGCTGGTTCAGTGTCTGTTCGCGTTCGTCATTGCCGCCGCCGATACC-CACGC 25084 Query 11664 CGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGC 11723 || ||| || || ||||| ||||| ||||| || ||||| || || || Sbjct 25085 CG--CGCGCACGGCCCACGGCGTCGATCTCGTCGATAAACACGATGCAAGGCGCATTCTT 25142 Query 11724 ACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAAC 11783 ||||||||||| | || || ||||| || || || || |||||||| || || Sbjct 25143 CTTGGCCTGTTCGAACATGTCGCGCACACGGGATGCACCGACCCCAACGAACATTTCCAC 25202 Query 11784 GAAGTTTGCGGCAGA-ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAG 11842 ||||| | | || | |||| ||| || || | |||||| |||||||| || | Sbjct 25203 GAAGTCGGAACCCGAGATGGTGAA-GAACGGCACGCCCGCCTCACCCGCGATGGCGCGCG 25261 Query 11843 CGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGG 11902 |||| || || |||||||| || || | ||| | || || || || |||||||||| Sbjct 25262 CGAGCAGGGTTTTACCCGTGCCGGGGGGACCGACCAGCAGCGCACCTTTGGGGATCTTGC 25321 Query 11903 CACC---ACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTT 11959 | || || | ||| | || || || ||||| || || ||||| || || | Sbjct 25322 CGCCGAGAC-GCGAAA--ACTTCTGCGGGTTGCGCAGGAATTCGACGATCTCTTCCAGCT 25378 Query 11960 CCTCCTTGGCGGAGTCGATACC 11981 | |||||||| |||||| || Sbjct 25379 CTTCCTTGGCCTCGTCGATGCC 25400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587649066520800