Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_015249.1 Length=39270 Score E Sequences producing significant alignments: (Bits) Value seq34826 93.3 1e-14 >seq34826 Length=13225 Score = 93.3 bits (102), Expect = 1e-14 Identities = 129/178 (72%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 31400 GAGAACAACTCGTTCCTTGAAGCCCGTAACCTGTTCGACTCTGACATGCCAGTCACTTTA 31459 ||||||||| | ||| ||||| |||||||| |||||||| || ||| | |||| Sbjct 5818 GAGAACAACGACTACCTCGAAGCTCGTAACCTCTTCGACTCCGATATGTCGATCACCGCG 5759 Query 31460 CCGAATGGACAACAGTTCTCCGTGAATGACCTCCGAGACTTCGATATGAAGCATGTGATG 31519 || | || || | |||| | ||||||||||||||||||||| | || | ||| | Sbjct 5758 CCTGACGGCCAGCCGTTCGCTGTGAATGACCTCCGAGACTTCAACCTGCTTCGGGTGGT- 5700 Query 31520 CCAGCA-TATGACCGCCGTGTTGATGGTGATATTGCTATCATGGGTGGTACAGGAAAG 31576 || ||| || |||||| | || | ||||| || || |||||||||| || || ||| Sbjct 5699 CCCGCAGTACGACCGCAGGGTCAACGGTGACATCGCCCTCATGGGTGGCACCGGGAAG 5642 Score = 84.2 bits (92), Expect = 5e-12 Identities = 154/225 (68%), Gaps = 8/225 (4%) Strand=Plus/Minus Query 29267 CCAACAGGGCCGAGAGGTGTCATGCAGTTCACTAAGGCAACTGGTCAGGCTTATGGTCTC 29326 || || ||||| | ||| || ||||||||| ||||| ||||| | || || || || Sbjct 8011 CCTACGGGGCCTCGCGGTATCGGGCAGTTCACCAAGGCCACTGGGAAAGCCTACGGCCTG 7952 Query 29327 CAGAACGATGAGGACTTCACTGACCCGGCTAAGTCCATTGATGCAGGTGCTCGTTACCTT 29386 | ||| ||||||||| ||||| || |||||||| || |||| ||||| || | Sbjct 7951 ATCACCGAGGAGGACTTCTTCGACCCCGCCAAGTCCATCGACGCAGCCGCTCGGCACATG 7892 Query 29387 GCAGACCTCGTTAAGAAGTACAATGGTGACGAACTGAAAGCTGCCCTAGCGTACAACCAA 29446 ||| | | ||| || ||| || ||||| ||||| || ||| |||||||||| Sbjct 7891 CGCGACAACCTCAAGGCGTCCAACGGCGACGAGCTGAAGGCGCTCCTGATGTACAACCAA 7832 Query 29447 GGTGAAGGCCGTAATGGTAAGCCTCAA----CTGGAAGCCTACGA 29487 || | |||| ||| ||| ||| || ||||||||||| Sbjct 7831 GGGGCTGGCC----CGGTGGGCCGCAAGCAGCTCGAAGCCTACGA 7791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 125273701287424