Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_015273.1 Length=32317 Score E Sequences producing significant alignments: (Bits) Value seq5373 141 2e-29 >seq5373 Length=95907 Score = 141 bits (156), Expect = 2e-29 Identities = 273/399 (68%), Gaps = 4/399 (1%) Strand=Plus/Plus Query 25236 AAGTCGCGGCAGATCGGCGCGACGTTCTATTTCGCACGCGAGGCGCTAGACGATGCCTTG 25295 ||||||| || || || ||||| || ||||| || | || || |||| |||||| | Sbjct 57932 AAGTCGC--CAAATTGGTGCGACCTTTTATTTTGCTCATGAAGCCCTAGTCGATGCAGTA 57989 Query 25296 CAGACTGCACGCAATCAGATTTTTCTATCGGCCAGCAAGGCGCAGGCGCACGTTTTCAAG 25355 || | || ||||||||||||||||| ||| || || ||||| || |||||||| Sbjct 57990 AGAACAGGCCGAAATCAGATTTTTCTATCTGCCTCAAAAGCACAGGCACATATTTTCAAG 58049 Query 25356 TCGTACATTCGGCAGTTTGCCGCCGAGGCCGCCGAGGTCGAATTGACCGGCGACCCGATC 25415 |||||| ||||| || || | || || ||| | | || || |||||| Sbjct 58050 CATTACATTAAAGCTTTTGCAGCAGATGTTTGCGGTGTTGAACTCTCTGGTGATCCGATC 58109 Query 25416 ATTTTGCCGAACATGGCAGAGTTGATTTTCCTCGGCACGAATTCGCGAACGGCGCAGAGC 25475 ||||| | || |||||| | | ||| | || || || | ||||||| ||| || Sbjct 58110 ATTTTATCTAATGGTGCAGAGCTTAGATTCTTAGGAACTAACTATAGAACGGCTCAGGGC 58169 Query 25476 TATCACGGCAATTTCTATTTCGACGAGTATTTTTGGGTGAGCGGGTTTCG-CCAGCTCAA 25534 || || ||||| ||||| || || || ||| || | ||||| | | || | Sbjct 58170 CCACATGGAAATTTATATTTTGATGA-AATCTTTTGGACATATGGTTTTGATGAACTTGA 58228 Query 25535 CAAGGTTGCATCGGGCATGGCGATGCACAAGAAATGGCGAAAGACGTATTTTTCAACGCC 25594 || ||||| ||||| ||||| | |||| | |||||||| || || || ||||||||||| Sbjct 58229 GAAAGTTGCGTCGGGTATGGCCACGCACGATAAATGGCGTAAAACTTACTTTTCAACGCC 58288 Query 25595 GTCGAGCATCACGCACGAGGCTTACACCTTCTGGAGTGG 25633 || ||||| ||||| ||||| | ||||||| ||| Sbjct 58289 CTCATCGATCACACACGAAGCTTATAAATTCTGGACTGG 58327 Score = 100 bits (110), Expect = 6e-17 Identities = 385/596 (65%), Gaps = 9/596 (2%) Strand=Plus/Plus Query 12110 TTCAGTTTCTTCGGCAATGCCATGTTCATTTACTCCCTAGTTATGCCGTGACGCGCGCGG 12169 || |||||||| || || ||||||||| ||| || || || || || | || | || Sbjct 44481 TTGAGTTTCTTAGGTAAAGCCATGTTC-TTTCCTGTATATCTAAGCAGTCATACGTGAGG 44539 Query 12170 CGAAATCGGCGAGGTAACGGTCGGTGATGCGTTGGCGCAGCATCAGGTTTTCGATCGGCG 12229 ||||||| ||||| || ||||| ||||| ||||| | | | || | ||| | || | Sbjct 44540 CGAAATCAGCGAGATATCGGTCTGTGATACGTTGCTGTAAGGTGAGATCTTCAAGTGGGG 44599 Query 12230 GAACGGGCGTGTAGTCGTAATCGATCGCCAGCTTGCCGGCCTTGAGCGATTCGACGGGGT 12289 | || || || |||| ||||| | | | || || || | || || | || Sbjct 44600 GCACAGGGGTAAAGTCATAATCAAGCAATAAACGACCAGCTTTTAATGACTCTTTGCTGT 44659 Query 12290 TCGC-GCTGTCGTCGTACCAAGCCGAGCCGCCGAGCAGATAGCCGTTTG--CGATCAGCT 12346 | |||| ||| ||||| | || ||| | || || | | ||| || | Sbjct 44660 TGAATGCTGGA-TCGAACCAACACTGACCATCGATGATGTACCCTTGGGTACGA--AGAT 44716 Query 12347 CGCGGAATTTCGCGTTGATGCTTTCGATCATGTCTTTCACGATCGACGGGTGCATCGGCT 12406 | |||||||| || || |||| || | ||||||||| | | || ||||||| || | Sbjct 44717 CACGGAATTTGGCATTAATGCCCTCTACGATGTCTTTCGCCAAAGATGGGTGCAAAGGTT 44776 Query 12407 TGTCGACATAAACCATGTGTGCTTCCGCCATCGTGTCGGCGAGCACTTGCGCGGTGCGCG 12466 | || || ||| || |||| ||||||||||| | | ||||| || || || | Sbjct 44777 TATCAACTGCCCACATATGACCTTCAGCCATCGTGTCCGACAAAACTTGAGCTGTACGAG 44836 Query 12467 TGTAGTTCTCGAATGCGAACAGCGGATCATCCGAGCAGGTGCGCGAACCCCAGAAGCGAT 12526 | |||| || ||||| || | |||||| | || || || || |||||||| || || Sbjct 44837 TTGAGTTTTCAAATGCAAATAAAGGATCAGCAGAACAAGTACGTGAACCCCAAAAACGGA 44896 Query 12527 AGCCCGTCGAG-TTGATGAGCGTCGTCACATCGTTCTCGTTGAGGTAGCCGGCATCGGTC 12585 || || || | | ||| | ||||| | || || ||||| || || |||||||| Sbjct 44897 AG-CCATCACGCTGGATTAAAGTCGTGATTTCATTTGAATTGAGATAACCAGCATCGGTA 44955 Query 12586 GCGGGGTCTTGCAAGTCCCAGAAAACATCCTTGCTGATACCCGTAACGCCATTGATGCCG 12645 | |||| | ||| ||||| || || || || || |||||||| | Sbjct 44956 TCCATTGACTGCAGTTGCCAAAAAACGTCTTTAGAAATCCCTGTCACGCCATTTACTGGT 45015 Query 12646 ACATTCGAAATCGTCTTGTGCCAGCCCGTTTCCTCGTCGATCTTGGCGCGCAAGCC 12701 || || |||| || || ||||| || || || | ||| || || ||||| || || Sbjct 45016 ACGTTTGAAAGGGTTTTATGCCATCCTGTGTCATTGTCAATTTTTGCGCGTAAACC 45071 Score = 95.1 bits (104), Expect = 2e-15 Identities = 199/297 (67%), Gaps = 0/297 (0%) Strand=Plus/Plus Query 22499 TTCGATGTTCTCGGCAACAGCAGCGCGGCCGAGGTCTTCGACGACATACGCATCGTTCGA 22558 ||| ||||| || || | ||||| | || | ||||||| | || | ||||| || Sbjct 55384 TTCAATGTTTTCAGCCATTGCAGCAAGACCTAAATCTTCGATGTAGTAATCTTCGTTTGA 55443 Query 22559 CGATTCATAGTTCTCGATACGGTCGCGCTTCGCGTTGTCGACGATCGTGCGACGCCGTGC 22618 ||||||||||||||||| | ||||| || || || || || | || ||||| || | Sbjct 55444 AGATTCATAGTTCTCGATTTGATCGCGTTTGGCATTATCTACTACGGTACGACGACGAGA 55503 Query 22619 GCTGTCTTGAAAGTACAGAGACAGATTGTCGAAACTCGTCACCATCACGGCATTGGCCGG 22678 | || |||| || | || || ||||| || | ||||||| | ||||| | || Sbjct 55504 TCCTTCCTGAACATAGATTGAAAGGTTGTCAAATGTTGTCACCAAGATTGCATTTTCTGG 55563 Query 22679 GAAGAAAGGCACGGTCACGGCCGGCAGGTTGCCGATGCGCTTCTGGCTCTGGATCACGTC 22738 |||||| ||||| | | | || | ||||| ||||| || ||||| || | || Sbjct 55564 GAAGAACGGCACAGCATAGACAGGTAAATTGCCCATGCGTTTTTGGCTGATAATAATATC 55623 Query 22739 AGCGGCCATCATTTCGGTCGGCGCTTGGGCCTTGTTGACGAGCGGGAAATACTTGTC 22795 || | | ||||| | | |||| | ||||| || || |||||||| ||||| Sbjct 55624 TGCAGAAAGTTTTTCGCTGTTCTCTTGCTCTTTGTTTACCAGTGGGAAATATTTGTC 55680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 103071722161928