Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq12046 89.7 6e-13 seq5 89.7 6e-13 seq1973 86.0 8e-12 seq7 86.0 8e-12 >seq12046 Length=50888 Score = 89.7 bits (98), Expect = 6e-13 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 140960 GTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGTAGGTTCGAGTCCTAC 141019 ||||||||| ||||||||||||| ||||||||||| || |||||||||||||| |||||| Sbjct 6990 GTAGCTCAGCTGGATAGAGCAACAGCCTTCTAAGCTGTGGGTCGTAGGTTCGAATCCTAC 7049 Query 141020 CTGG 141023 | || Sbjct 7050 CGGG 7053 >seq5 Length=869209 Score = 89.7 bits (98), Expect = 6e-13 Identities = 219/327 (67%), Gaps = 19/327 (6%) Strand=Plus/Plus Query 139584 GAAGGAATACGTTTTTATGTTTCTTTTGCTTGCAGTTTTGCTTTTGGTGAACTTAAACTC 139643 |||| || || |||||||| ||||| |||||||||||||||| ||| | | | || Sbjct 713111 GAAGCGATCCGCTTTTATGTCAGCTTTGCCTGCAGTTTTGCTTTTGCTGAGCGTGAGCTG 713170 Query 139644 ATGGAAGGTTCTGCCAAGATCATCTCCCTTATTGCGAGAGATGAAAACCAACACCTCGCC 139703 |||||||| ||| ||||| ||| || ||||| | |||||| | ||||||| || Sbjct 713171 ATGGAAGGGAATGCTAAGATTATCCGGCTGATTGCCCGCGATGAAGCGCTACACCTCACC 713230 Query 139704 ATCACCCAAAACATTCTGAACAAATGGGCTCAG----GGTGATGATCCTGAAATGAAGCA 139759 ||| || | || ||||| | ||| ||| | ||||||||| |||||| | | Sbjct 713231 GGCACTCAGCATATGCTGAATATTCTGGC-CAGCGGTGATGATGATCCGGAAATGGCGGA 713289 Query 139760 GAT---CATGAAGGAAGAAGAGGAGTGGACTTACAAAGCATTTGATAATGCTGTCAACG- 139815 || || || |||||||| | ||||| ||| | | |||| | || Sbjct 713290 AATTGCCAAAGAGTGCGAAGAGGAAT---CTTAC--GCCATCT--TTATGCGCGCGGCGG 713342 Query 139816 ---AAGAAAAGCGTTGGGCGGACTACCTGTTCAAGGATGGATCGATGATCGGTCTTAATG 139872 |||||||| ||||| | ||| ||||| || ||||| |||||||| || || || Sbjct 713343 AGCAAGAAAAGGACTGGGCAGCCTATCTGTTTAAAGATGGCTCGATGATTGGCCTGAACA 713402 Query 139873 ACAAACTCTTGCAGCAGTATGTTGAGT 139899 | | | || ||||||||||||| Sbjct 713403 AAGATATTCTGTGTCAGTATGTTGAGT 713429 >seq1973 Length=162522 Score = 86.0 bits (94), Expect = 8e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 141678 GGAAGAGTGGTCGAGTGGTTTATGGCACTGGTCTTGAAAACCAGCGAGGGTGCAAGTTCT 141737 ||||| |||| ||| |||||| |||| ||||||||||||| |||||||| ||| || Sbjct 4917 GGAAGCGTGGCAGAGCGGTTTAATGCACCGGTCTTGAAAACCGACGAGGGTGTGAGTCCT 4858 Query 141738 CCGTGGGTTCAAATCCCACCTCTTCCG 141764 ||||| |||| |||| |||| |||||| Sbjct 4857 CCGTGAGTTCGAATCTCACCGCTTCCG 4831 >seq7 Length=747525 Score = 86.0 bits (94), Expect = 8e-12 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 140960 GTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGTAGGTTCGAGTCCTAC 141019 ||||||||||||||||||||||| ||||||||||| || |||| ||||||||| ||||| Sbjct 439912 GTAGCTCAGTTGGATAGAGCAACGGCCTTCTAAGCCGTGGGTCATAGGTTCGAATCCTAT 439853 Query 141020 CTGGGTCGCC 141029 | || |||| Sbjct 439852 CGGGCGCGCC 439843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 609021606529440