Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_015296.1 Length=157061 Score E Sequences producing significant alignments: (Bits) Value seq5 114 1e-20 seq51 104 2e-17 >seq5 Length=869209 Score = 114 bits (126), Expect = 1e-20 Identities = 283/419 (68%), Gaps = 14/419 (3%) Strand=Plus/Minus Query 54203 ACATGACGCGGTTGATCTGAATACCATAGTCGATACGGCGTTCACGGTTCTCTTCAAGAC 54262 |||| | |||||| | ||| | |||||||| | | | | | | ||||||||||| | || Sbjct 711173 ACATCAGGCGGTTAAACTGCACGCCATAGTCCAGATGCCTTACCCGGTTCTCTTCTACAC 711114 Query 54263 CACGGTTGTTCTTCAGGACCA-CAAC-ATCATCAAATTGATAATGCCAGATAGGGATATA 54320 | ||||| || ||||| |||| || | || || | || |||||| | |||| || | Sbjct 711113 CGCGGTTATTTTTCAGTACCAGCAGCGAT--TCCACTTCCAGATGCCACA-AGGGGTAGA 711057 Query 54321 GCAAGTTG-CTGATCCGCCACGAATACCGCCTTGAGAGCAAGACTTTAATGCCCCAGTCA 54379 || | || | | || ||||| | ||||||||| ||||| |||| ||| ||| Sbjct 711056 ACAGGGTGGCGGCACCACCACGCACACCGCCTTGCGAGCAGCTTTTTACTGCG---GTCT 711000 Query 54380 GATATT--TTATGAAA--GGAACCAGGCCTGTGTGCACCATTTCACCTTTTCGGATAGGG 54435 | | | |||| ||| ||| ||| || || || | ||| || || ||||| ||| Sbjct 710999 GGAAATGCTTATAAAACGGGATACAG-CCAGTATGAAAGGCTTCGCCATTACGGATTGGG 710941 Query 54436 CTACCGATGCCACGAATTGCTCCAACATCAAATCCGATCCCAGCGCGTTTGGATACATAA 54495 ||||| | | ||||| || | | || || || || ||||| | || || || Sbjct 710940 CTACCTAAAGCGCGAATACGGCCTGCGTTAATACCAATACCTGCGCGCTGCGACACGTAT 710881 Query 54496 TCAACAATACTTTTGGCTGTAGCATTGATTGAGTCCAAAGTGTCACCGGTTTTGATAAGA 54555 | ||||| ||| || |||||||| || |||| ||||||| | || || Sbjct 710880 TTTACAATGGCACTGGAGGTGGCATTGATCGAATCCAGGCTGTCACCACACTCAATCAGT 710821 Query 54556 ACACAAGAACTGAATTGGCGGGTTGGGGTACGAACGCCGGACATGATGGGTGTTGGAAG 54614 || || || ||||| || |||||||||||||| ||||| ||||| || ||||| || || Sbjct 710820 ACGCAGGAGCTGAACTGACGGGTTGGGGTACGCACGCCCGACATAATAGGTGTCGGCAG 710762 >seq51 Length=473680 Score = 104 bits (114), Expect = 2e-17 Identities = 74/84 (88%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 137224 CAATTTTGGCCCCGTAGCTCAGT-GGTTAGAGCAGTCGACTCATAATCGATTGGTCGCTG 137282 ||||| |||||| ||||||||| |||||||||| |||||||||||||||| |||||||| Sbjct 469221 CAATTCAGGCCCCATAGCTCAGTTGGTTAGAGCACTCGACTCATAATCGATCGGTCGCTG 469280 Query 137283 GTTCAAGTCCAGCCAGGGTCACCA 137306 |||| |||||||| ||| ||||| Sbjct 469281 GTTCGAGTCCAGCTGGGGCCACCA 469304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 501335166521760