Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq2234 172 1e-37 seq32926 122 2e-22 >seq2234 Length=154088 Score = 172 bits (190), Expect = 1e-37 Identities = 172/223 (77%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| |||| || ||| | |||||||||||| ||||| || ||||||||||| | ||||| Sbjct 11187 TCTAAGTCGCAGAACCAAGTGAAGAGTGGATTCTTTCTGGATATTGTAATCAGACAGAGT 11128 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| ||||| || || |||||||| | || || ||||||||||| ||||| Sbjct 11127 ACGACCATCTTCAAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGGTCTGGAGGGATGCC 11068 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 |||||| || || |||||| ||||| || || || ||||| | ||| ||||| | Sbjct 11067 TTCTTTATCCTGGATTTTTGTTTTGACATTTTCTATTGTGTCGCTAGGTTCAACTTCTAA 11008 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || | ||||| ||||||| ||| |||||||| | ||||||| Sbjct 11007 CGTTATGGTCTTCCCTGTCAGAGTCTTTACGAATATTTGCATT 10965 Score = 158 bits (174), Expect = 3e-33 Identities = 168/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || ||||| || || || ||||| || ||||| ||||| ||||| || | ||||| Sbjct 11415 TCTAAGCCTCAAGACTAGATGTAGAGTAGATTCTTTCTGAATGTTGTAGTCCGATAGAGT 11356 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| || |||||||| || || || | || ||||||||||| ||||| || Sbjct 11355 ACGGCCATCTTCTAGTTGCTTACCAGCAAAAATCAAACGCTGTTGGTCTGGGGGAATACC 11296 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 |||||| ||||| |||||| |||||| || || || ||||| | ||| ||| | Sbjct 11295 TTCTTTATCTTGGATTTTTGTCTTGACATTTTCTATTGTGTCGCTAGGTTCACTTTCTAA 11236 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| | ||||| |||||||||||||| || || | |||||| Sbjct 11235 GGTTATGGTCTTCCCTGTCAAAGTTTTGACAAATATTTGCAT 11194 Score = 154 bits (170), Expect = 3e-32 Identities = 170/225 (76%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| |||||||| || | |||||| || || || ||||| || ||||| || | ||||| Sbjct 11871 TCTTAGTCTCAAGACCAAGTGAAGGGTTGATTCCTTTTGGATGTTGTAGTCCGACAGAGT 11812 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| |||||||| || || ||||| | ||||||||| || ||||| || || Sbjct 11811 ACGTCCATCTTCTAGCTGCTTGCCCGCAAAGATTAATCGTTGTTGATCAGGAGGGATACC 11752 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTC 195095 ||| || ||||||||||| ||||| || ||||| || || |||| || ||||| Sbjct 11751 TTCCTTATCTTGAATTTTAGCTTTGACATTTTCAATTGTATC---ACTTGGCTCAACTTC 11695 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| ||||| || || | |||||| ||||| | |||||| Sbjct 11694 TAGTGTAATTGTCTTCCCAGTAAGAGTTTTGACGAAGATTTGCAT 11650 Score = 152 bits (168), Expect = 1e-31 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| |||| | ||| |||||||||||||| |||||||| ||||||||||| | |||||| Sbjct 10959 TCTCAGTCGGAGAACCAGGTGAAGAGTGGATTCTTTTTGGATATTGTAATCTGAAAGAGT 10900 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| |||||||| || || ||||| || | || || ||||| || || || Sbjct 10899 ACGGCCATCTTCAAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCTGGTGGGATACC 10840 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||||| |||||||| || ||| || || || || ||||| | ||||||||||| Sbjct 10839 CTCTTTATCTTGAATCTTGGCCTTCACATTTTCGATTGTGTCACTAGGCTCCACTTCAAG 10780 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | || ||||| |||| ||| || || || | ||||| Sbjct 10779 AGTGATGGTTTTTCCAGTCAGAGTCTTCACAAAGATCTGCAT 10738 Score = 150 bits (166), Expect = 4e-31 Identities = 169/225 (75%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||||||||| ||||| || || ||||| || ||||||||||| || ||||| | ||||| Sbjct 12099 TCTGAGTCTTAAAACCAGATGCAGAGTAGATTCTTTTTGAATGTTATAATCCGACAGAGT 12040 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| || |||||||| || || || | || || || ||||| ||||| || Sbjct 12039 ACGGCCATCTTCTAGTTGCTTACCAGCAAAAATTAAACGCTGCTGATCTGGGGGAATTCC 11980 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 ||||||||| || |||||| || || || |||||||| || ||| ||| ||||| Sbjct 11979 TTCTTTGTCCTGGATTTTTGCTTTAACATTTTCAATGGTATC---ACTTGGTTCGACTTC 11923 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | |||| || || ||||| | ||| ||||| || | |||||| Sbjct 11922 TAATGTAATTGTTTTACCTGTTAGAGTCTTTACAAAAATTTGCAT 11878 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| | ||| || || || || ||||||||||| || |||||||| | || || Sbjct 12327 TCTTAATCTGAGAACTAGATGGAGTGTAGACTCTTTTTGGATGTTGTAATCCGACAGGGT 12268 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||||||| ||||| ||||| || || || || | ||| || ||||| |||||||| Sbjct 12267 ACGCCCATCTTCAAGCTGTTTACCAGCAAAAATCAGCCTTTGCTGATCTGGTGGAATGCC 12208 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 |||||| |||||||||||| ||||| || ||||| || || ||| ||||| | Sbjct 12207 TTCTTTATCTTGAATTTTTGTTTTGACATTTTCAATTGTATCGCTTGGTTCTACTTCTAA 12148 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| | |||||||| || | ||||| || || | |||||| Sbjct 12147 GGTGATGGTCTTTCCAGTGAGGGTTTTAACAAAAATTTGCAT 12106 Score = 147 bits (162), Expect = 5e-30 Identities = 167/224 (75%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| || | ||| || ||||| ||||| || |||||||| ||||| || | || || Sbjct 10731 TCTGAGCCTGAGAACTAGATGAAGTGTGGATTCCTTTTGAATGTTGTAGTCCGAGAGGGT 10672 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| | || || || || ||||| | ||||||||| ||||||||||| || Sbjct 10671 TCTTCCATCTTCCAATTGTTTTCCAGCAAAGATCAATCGTTGTTGATCTGGAGGAATTCC 10612 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||||||||| ||||| || ||| || || |||||||| || | || || || || Sbjct 10611 TTCTTTGTCCTGAATCTTGGCCTTTACATTTTCAATGGTATCACTAGGCTCAACCTCTAG 10552 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || | ||||| || || | |||||| || || | ||||||| Sbjct 10551 AGTGATGGTCTTGCCGGTGAGAGTTTTCACAAAAATCTGCATTT 10508 Score = 136 bits (150), Expect = 9e-27 Identities = 148/195 (76%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 ||||||||||| | ||| ||||| ||||| || |||||||| || || | || ||||| Sbjct 13455 AGTCTCAAAACCAAGTGTAGAGTAGACTCCTTCTGAATATTATAGTCAGACAGGGTTCTT 13396 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| | ||| ||||| || ||||| || |||||||| ||||| || || ||||| Sbjct 13395 CCATCTTCCAACTGTTTACCAGCAAAGATGAGACGTTGTTGATCTGGTGGTATTCCTTCC 13336 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGG 195099 |||||||| || ||| || ||||| ||||| || || ||| || ||||| || Sbjct 13335 TTGTCTTGGATCTTTGCTTTAACGTTTTCAATAGTATC---ACTGGGCTCGACTTCTAGT 13279 Query 195100 GTAACCGTCTTTCCT 195114 |||| || |||||| Sbjct 13278 GTAATTGTTTTTCCT 13264 Score = 134 bits (148), Expect = 3e-26 Identities = 150/199 (75%), Gaps = 6/199 (3%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 || ||| ||||| || || || ||||| || ||||| ||||| || || || | || || Sbjct 12639 TCGGAGCCTCAAGACTAGATGCAGAGTTGATTCTTTCTGAATGTTATAGTCCGATAGGGT 12580 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 || |||||||| || || |||||||||||||| | | || || ||||||||||| || Sbjct 12579 TCGGCCATCTTCAAGTTGTTTACCTGCGAAGATTAACCTCTGCTGATCTGGAGGAATACC 12520 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 |||||| ||||||||||| || || ||||||||||| || ||| ||| ||||| Sbjct 12519 TTCTTTATCTTGAATTTTAGCTTTCACATTCTCAATGGTATC---ACTTGGTTCAACTTC 12463 Query 195096 AAGGGTAACCGTCTTTCCT 195114 ||| |||| || || ||| Sbjct 12462 AAGAGTAATGGTTTTACCT 12444 Score = 131 bits (144), Expect = 4e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 194926 CTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCA 194985 |||| ||| | || | || || |||||||| || |||||||| | |||||| | ||| Sbjct 11636 CTCAGAACTAAATGTAATGTAGATTCTTTTTGGATGTTGTAATCAGAAAGAGTACGACCA 11577 Query 194986 TCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTG 195045 ||||| | ||||||||| || || || || | ||||| ||||| || || ||||||||| Sbjct 11576 TCTTCCAACTGCTTACCAGCAAAAATTAGCCTCTGTTGATCTGGGGGGATACCTTCTTTG 11517 Query 195046 TCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACC 195105 ||||||||||| |||||||| || || ||||| | || ||||| | ||| | Sbjct 11516 TCTTGAATTTTGGCTTTGACGTTTTCTATTGTGTCACTAGGCTCTACTTCCAAGGTGATG 11457 Query 195106 GTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || || | ||||| ||||| | |||||| Sbjct 11456 GTTTTGCCAGTTAGGGTTTTCACGAAAATTTGCAT 11422 >seq32926 Length=14205 Score = 122 bits (134), Expect = 2e-22 Identities = 160/221 (72%), Gaps = 13/221 (6%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 ||||||||||| | ||| | ||| ||||| || |||||||| || || | || ||||| Sbjct 13903 AGTCTCAAAACCAAGTGTACAGTAGACTCCTTCTGAATATTATAGTCAGACAGGGTTCTT 13962 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| | ||| || || || || |||||||| ||||| || || ||||| Sbjct 13963 CCATCTTCCA-------ACCAGCAAAAATGAGACGTTGTTGATCTGGTGGTATTCCTTCC 14015 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGG 195099 |||||||| || ||| || ||||| ||||| | || ||| || ||||| || Sbjct 14016 TTGTCTTGGATCTTTGCTTTAACGTTTTCAATAGCATC---ACTGGGCTCGACTTCTAGT 14072 Query 195100 GTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| || |||||||| | |||||| ||||| | ||||| Sbjct 14073 GTAATTGTTTTTCCTGTTAGAGTTTTGACGAATATCTGCAT 14113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1106919503265012