Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq2234 118 7e-22 seq32926 96.9 2e-15 >seq2234 Length=154088 Score = 118 bits (130), Expect = 7e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| |||| | | ||||| ||||| ||| |||||| || || || || || | Sbjct 10966 TTCCTCCTCTCAGTCGGAGAACCAGGTGAAGAGTGGATTCTTTTTGGATATTGTAATCTG 10907 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 |||| | || |||| || ||||| ||||| ||||| || || | ||||| ||| | | Sbjct 10906 AAAGAGTACGGCCATCTTCAAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCTGGTG 10847 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | ||||| || || |||||| || || | | || | |||| | ||| | Sbjct 10846 GGATACCCTCTTTATCTTGAATCTTGGCCTTCACATTTTCGATTGTGTCACTAGGCTCCA 10787 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || | || ||||||||||| || |||||||||||||||||||||||| Sbjct 10786 CTTCAAGAGTGATGGTTTTTCCAGTCAGAGTCTTCACAAAGATCTGCATA 10737 Score = 100 bits (110), Expect = 2e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 34767 CTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCA 34826 |||||||||||||| | || || |||||||| |||||||| || ||| ||| | || Sbjct 13452 CTCAAAACCAAGTGTAGAGTAGACTCCTTCTGAATATTATAGTCAGACAGGGTTCTTCCA 13393 Query 34827 TCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34886 || |||| |||||| || ||||| || || ||||| || ||| | || | || |||||| Sbjct 13392 TCTTCCAACTGTTTACCAGCAAAGATGAGACGTTGTTGATCTGGTGGTATTCCTTCCTTG 13333 Query 34887 TCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 || ||||| ||| ||| | | || | |||| || ||| || || | || || Sbjct 13332 TCTTGGATCTTTGCTTTAACGTTTTCAATAGTATCACTGGGCTCGACTTCTAGTGTAATT 13273 Query 34947 GTTTTTCC 34954 |||||||| Sbjct 13272 GTTTTTCC 13265 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| || | | || ||||||||||| ||| ||||||||| || || || || || Sbjct 11192 CCTCCTCTAAGTCGCAGAACCAAGTGAAGAGTGGATTCTTTCTGGATATTGTAATCAGAC 11133 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| || |||||||||||||| || || | || ||||||||| | || Sbjct 11132 AGAGTACGACCATCTTCAAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGGTCTGGAGGG 11073 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || || || || || || |||||| | |||| | || | | ||||| Sbjct 11072 ATGCCTTCTTTATCCTGGATTTTTGTTTTGACATTTTCTATTGTGTCGCTAGGTTCAACT 11013 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | |||||||| || || || |||||||| || || || ||||| Sbjct 11012 TCTAACGTTATGGTCTTCCCTGTCAGAGTCTTTACGAATATTTGCAT 10966 >seq32926 Length=14205 Score = 96.9 bits (106), Expect = 2e-15 Identities = 150/215 (70%), Gaps = 7/215 (3%) Strand=Plus/Plus Query 34767 CTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCA 34826 |||||||||||||| | || || |||||||| |||||||| || ||| ||| | || Sbjct 13906 CTCAAAACCAAGTGTACAGTAGACTCCTTCTGAATATTATAGTCAGACAGGGTTCTTCCA 13965 Query 34827 TCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34886 || |||| || ||||| || || ||||| || ||| | || | || |||||| Sbjct 13966 TCTTCCA-------ACCAGCAAAAATGAGACGTTGTTGATCTGGTGGTATTCCTTCCTTG 14018 Query 34887 TCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 || ||||| ||| ||| | | || | |||| || ||| || || | || || Sbjct 14019 TCTTGGATCTTTGCTTTAACGTTTTCAATAGCATCACTGGGCTCGACTTCTAGTGTAATT 14078 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||||||| || ||||| || || || |||||||| Sbjct 14079 GTTTTTCCTGTTAGAGTTTTGACGAATATCTGCAT 14113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323920501312608