Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_015466.1 Length=62668 Score E Sequences producing significant alignments: (Bits) Value seq379 102 3e-17 seq1426 89.7 2e-13 >seq379 Length=288837 Score = 102 bits (112), Expect = 3e-17 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 3943 AGGTTGAGGGAACCCAGGAGACACGCACCATTCGGCGGAAGCGGTTGCTCCCCACAGGGG 4002 || |||| || ||||| || || || |||| ||||| ||||| || |||||||||||| Sbjct 226671 AGATTGACCGACCCCAGCAGGCAGGCGCCATAGGGCGGCAGCGGCTGTTCCCCACAGGGG 226730 Query 4003 TTGGTCGCAGCGATCGTCTCGCAATAATAGAGGTTGTTCATCCGGTTGATGGTGTCGATG 4062 ||||| || ||||| || || |||| || ||||||||| ||||||| ||||||| Sbjct 226731 TTGGTGGCGGCGATGGTTTCCACATAACCCAGATTGTTCATCTTGTTGATGCGGTCGATG 226790 Query 4063 AACAAGACGCCAGGGTCTGCGAAGTC 4088 || | || || || || ||||| || Sbjct 226791 AAGATCACACCGGGTTCCGCGAAATC 226816 >seq1426 Length=185344 Score = 89.7 bits (98), Expect = 2e-13 Identities = 121/164 (74%), Gaps = 11/164 (7%) Strand=Plus/Minus Query 22109 GGCCCCAGACGGTTTCGATA-GCTTCTGCAGCACCGACT--TGGAGCAACTTCCTCCGGG 22165 |||||||||||||||||||| | |||||| | ||| | | | || ||| | || Sbjct 45499 GGCCCCAGACGGTTTCGATATGGTTCTGCCCCCCCGTCGCCTCGGCCAGTTTCTTGCGCA 45440 Query 22166 CTTTGCAGACGAAGACGTCAATGATCTTCAGCTCCGGTTCGTCCCGTCCGCCATAAATCT 22225 ||||||| ||||||||| |||||||||||||||||||| ||| |||||||||| Sbjct 45439 GCTTGCAGATGAAGACGTCGATGATCTTCAGCTCCGGTTCATCCATGCCGCCATAAA--- 45383 Query 22226 CGGTCA--GCGCAGC--TTCCTTGGTCAGCGTGCCTCCCTTGCG 22265 ||| | | | | | |||||||||||| || |||||||| Sbjct 45382 -GGTGATTGAGAAACATTTCCTTGGTCAGTGTCGTGCCCTTGCG 45340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 199972567982684