Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_016767.1 Length=60714 Score E Sequences producing significant alignments: (Bits) Value seq1 370 4e-98 >seq1 Length=1655743 Score = 370 bits (410), Expect = 4e-98 Identities = 654/947 (69%), Gaps = 11/947 (1%) Strand=Plus/Plus Query 8372 GCGAAAACAGCGTCATCCAGCGTAAGACCGATCTGGAGTCCGACGCCGGCGACCGCATCT 8431 |||| ||| ||||||| | |||| || | | ||||| ||||| ||||| | | Sbjct 417418 GCGAGAACTTCGTCATCGAAGAGAAGATGGACATCGCCTCCGATGCCGGTGACCGGGTTT 417477 Query 8432 CCTTCGACCTGTCCGTGCAGCTGCGCGGCAAGCCTACAGCCGGCGATGACCGTCTGAAAG 8491 | |||||||| || || | |||||| ||||| || |||||||| ||| | || | Sbjct 417478 CTTTCGACCTCTCGGTTCGCCTGCGCCAGAAGCCGACCTTCGGCGATGCCCGCGTCAAGG 417537 Query 8492 GCAAGGAAGAAGCCCTGAAGTTCTTCACCGACGAAGTAATCATCGACCAGCTGCGTAAAT 8551 |||||||||| ||| |||| |||||| ||||| ||||||||||| |||| | Sbjct 417538 GCAAGGAAGAGCATCTGCGCTTCTACACCGATGAAGTCGTCATCGACCAGATGCGCCACC 417597 Query 8552 CCGTTTCCGCAGGCGGTAAGATGACCCGCAAGCGCACCGCGCATGACCTGCGTAAGGTGG 8611 | || || || ||||| ||| | ||||| ||||||| || || ||||| ||||| | Sbjct 417598 CTGTCTCGGCGGGCGGCCGCATGTCGCGCAAACGCACCGTCCACGATCTGCGCAAGGTCG 417657 Query 8612 CAAAGGATCGTCTGTCCGACTACTGGGCGCAGTACATTGACGAGCTGAAGTTCGTCTACA 8671 | || | || ||| ||||||||| ||||| | |||||| || | ||| |||| Sbjct 417658 CGAAACAGCGCCTGAAAGACTACTGGAAACAGTATCTGGACGAGATGCACTTCATCTATC 417717 Query 8672 TGTCTGGCCTGCGTGGTACCAATGAAGATTTCATTGAGGACTTCGACTATGCCGGCCACG 8731 |||| ||| ||||| | ||| || || ||||| ||||| || |||| ||||| | Sbjct 417718 TGTCGGGCGCCCGTGGCATCAACGAGGAATTCATCGAGGATACCGCCTATTCCGGCTTTG 417777 Query 8732 CGGGCAACCCGCT-ACGCCAGCCTGATGCACAACACCTCCTGTTCGGTGGTGCGGCCAAC 8790 | ||||| | || || || || ||| | ||| ||||||||| |||| | || | | Sbjct 417778 CAAGCAACGCCCTGACCGCA-CCGGATTCCGCGCACATCCTGTTCGCTGGTTCCGCTACC 417836 Query 8791 TCGAAGGCGTCACTGACTGCCGACGACAAGATGAGCCGCGTCACC---ATCGAACGCGCC 8847 ||| ||| | | || | ||||| ||| |||| |||| ||||| || || Sbjct 417837 TCGGTGGCAACCATCACCTCGTCCGACATCATGT--CGCG-CACCCTGATCGAGCGGGCG 417893 Query 8848 ACCACCAAAGCCCGTATGATGCGTGCTCGCGATCCTAAGACCGCGAACCTGCTGCCGGTC 8907 | || || ||||||||| | ||| || | || | || || |||||||| Sbjct 417894 GCGACGCGGGCGAAGATGATGCGTTCCATCGACCCCGATGCCACCGACATGGTGCCGGTC 417953 Query 8908 TCCGTGGGCGGCGAGAAGCACTACGTCGTGCTGATGTCTCCGTATCAGGAGTACGATCTG 8967 || || | |||||| | | || | || ||||||| || |||||||| | | ||| Sbjct 417954 TCGGTCGAAGGCGAGGATCGCTTCATCACCGTGATGTCGCCCTATCAGGAATTCTCGCTG 418013 Query 8968 CGCAACGAAGTGGGCGAGCGTGGCTGGCTGGAAGTGCAGAAGGCGGCCGCAGCTGCTGAA 9027 |||| || | | | | |||||| | || | |||||||| || || || || ||| Sbjct 418014 CGCACCGCCGACGCTGCG---GGCTGGATCGACATCCAGAAGGCCGCTGCCGCCGCCGAA 418070 Query 9028 GGCAAGAACAACCCGATCTTTAAGGGCGGGCTGGGCATGATTAACAACGCCGTGCTGCAC 9087 ||| ||| ||||| ||||| | ||| |||||||||||| ||||||| ||||||||| Sbjct 418071 GGCCGGAAGAACCCCATCTTCCAAGGCTCGCTGGGCATGATCAACAACGTGGTGCTGCAC 418130 Query 9088 TCGCACGAGTCCGTCATCCGTATGAACGACTACGGTGCCGGCCAGAACGTGCAGGCAGCT 9147 | |||||| ||| ||||| | | | ||||||| || || ||| | | ||| || Sbjct 418131 TGCCACGAGAACGTGATCCGCTTCAGCAACTACGGCGCTGGTTCCAACCTTCCGGCGGCG 418190 Query 9148 CGCGCGCTGTTCCTCGGCCGTCAGGCAGCTGTCATCGCCTACGGTACCGCCGGTGGCCTT 9207 || ||||||||||||| || ||||| | || ||||| ||||| ||| |||| ||| | Sbjct 418191 CGGGCGCTGTTCCTCGCGCGCCAGGCGGGCGTGATCGCTTACGGCACCCCCGGCGGCATG 418250 Query 9208 CGCTTTACGTGGAAGGAAGAGACCGACGACTTCGGCAACGAGCCGACCGTCGCAGCCGGT 9267 ||||| | ||||||||| ||| || || | || |||||| || ||||| | |||||| Sbjct 418251 CGCTTCATGTGGAAGGAGGAGCTGGAGGATTACGACAACGAACCCACCGTGGTCGCCGGT 418310 Query 9268 ACCATCCTCGGGATTTCCAAAACCCGCTTCAACAAGCGCGATTTCGG 9314 ||||||||| | || ||||||| ||||| ||||| ||||| Sbjct 418311 TGCATCCTCGGCTTCAAGAAGACCCGCTACAACAGCCGCGACTTCGG 418357 Score = 324 bits (358), Expect = 5e-84 Identities = 569/824 (69%), Gaps = 6/824 (1%) Strand=Plus/Plus Query 5743 TCGCCTTACCGTCACAACCAGTTCCCGTTCACGCCTCTCTGGTGCTACCGCCGTGGCCGC 5802 ||||| ||||| ||||||| ||||||||||| || ||||| || |||| |||| Sbjct 414844 TCGCCCTACCGGCACAACCGTTTCCCGTTCACCCCGATCTGGGGCAACCGGAA-GGCCAA 414902 Query 5803 GATGGCCTT-CCCTACGGCATGATCCGGGGAATGCGCGACATGCAGGAGGACATCAACAA 5861 | || | ||||| ||||| |||| ||| |||| ||||||||||||||||| Sbjct 414903 TACGGGCGAGCCCTATGGCATCGTCCGCAACATGATCGACGCACAGGAGGACATCAACAA 414962 Query 5862 GCGTGCCTCCAAGGCGCTGCACATCCTGAGCACGAACAAGGTCATCATGGATGAGGGCGC 5921 ||| ||||||||||||| |||||| || ||||||||||||||||| | ||||| Sbjct 414963 GCGCCGCTCCAAGGCGCTGGCGATCCTGTCCAGCAACAAGGTCATCATGGAGGCTGGCGC 415022 Query 5922 GGTAGACGACCTCGACGAGTTCGCGGAGGAAGTTTCCCGCCCTGATGCCATACTGGTGAA 5981 || |||||||| | |||| ||| |||||| |||| || |||| ||| | | Sbjct 415023 TGTGCCGGACCTCGATGCCTTCGAGGAAGAAGTTGCCCGTCCCGATGGCATCATCATC-- 415080 Query 5982 GAAAAAGGG--CTACCAGCTCGAAATCAACGCCGAACGGGAGCTTGCGCCGGCGCACCTT 6039 | || ||| | | | ||||| | || | ||| || | || ||| || ||| | Sbjct 415081 GTCAATGGGAACAAACGCCTCGATCTGAATGTCGATCGCAACCTCGCGGACGCACACATC 415140 Query 6040 GACCTGATGAGCCGGTCTATTTCGATGATCCAGACCCTCTCTGGCGTCACCGATGAGAAC 6099 ||| | ||| | | ||| || |||||||||| | | || || ||||| |||||| | Sbjct 415141 GACATCATGGGTCAGTCCATCCAGATGATCCAGTCGTTGTCCGGTGTCACAGATGAGGCC 415200 Query 6100 ATGGGCCGCTCTACCAATGCGACCAGCGGACGAGCGATTAACGCCCGTCAGGAGCAGGGA 6159 ||||| ||| | || || || | ||| ||||| | |||||| ||||| |||| Sbjct 415201 ATGGGGCGCACCACGAACGCCTCATCCGGCAAGGCGATCATCGCCCGGCAGGATCAGGCG 415260 Query 6160 AGCATGACCACGGCCGGGATTTTCGATAATCTACGCTTCGCCGTGCAGATCCATGGCTCG 6219 | | | ||| | || ||||| || || || |||| || ||| ||| | Sbjct 415261 TCCGTCAGCACCTCGACCATCTTCGACAACCTGCGTGCCGCCCGCCAATACCACGGCGAG 415320 Query 6220 AAAGAGCTGTCGCTTATCGAGCAGTTCTTCACCGAGCGTAAGCAGTTCCGCATCACGAAC 6279 || ||| ||||| |||| |||||| | || || ||||||||||||||||||||| Sbjct 415321 AAGATGCTCTCGCTCGTCGAACAGTTCATGACGGACGAGAAGCAGTTCCGCATCACGAAC 415380 Query 6280 GCGCGCGGCACCCCGGAATATATCGAGGTGAACGACGGACTGCCGGAGAACGACATCGTT 6339 || ||| || || ||| | || ||||| || || || ||||| |||||||| Sbjct 415381 AGCCGGGGCCAGCCCGACTATGTGACAGTCAACGATGGCCTTCCCGAGAATGACATCGTG 415440 Query 6340 CGCTCGAAGGCCGATTTCATCATCAGCGATGCAGACTGGCGCGCGAGCGTCCGGCAGGCC 6399 || || |||||||||||||||||| ||| | ||| |||| | | ||||||||| Sbjct 415441 CGGTCCAAGGCCGATTTCATCATCTCCGAAGATTCATGGTCAGCGACCATGCGGCAGGCC 415500 Query 6400 CAGACGGAAGAGCTGTTCGCCCTGTTGCAGCAGCTGGCACCGGTGGCCCCTCAGATTGCG 6459 ||| ||| || || | || ||| || |||| || || |||||||| ||| | | | Sbjct 415501 CAGGTCGAACAGATGATGGCGCTGGTGACCGAGCTTGCGCCTGTGGCCCCGCAGCTGGTG 415560 Query 6460 CTCGTGATGCTCGACCTCATCGTAGAGGGCATGGACATTACCAGCCGCGACGAGATCGTG 6519 || ||| || ||||||| | || || ||||| | |||||||||||||||||||| Sbjct 415561 CTGGTGCTGATCGACCTGCTTGTCGAAATGATGGATGTCCCCAGCCGCGACGAGATCGTG 415620 Query 6520 AAGCGCATCCGTCAGGTCACGGGAATGCGCGACCCGGACGCGGA 6563 ||||||||||| || || | || ||| || || ||||| || Sbjct 415621 AAGCGCATCCGCCAAATCTCCGGCATGGAAGATCCTGACGCCGA 415664 Score = 109 bits (120), Expect = 2e-19 Identities = 183/262 (70%), Gaps = 2/262 (1%) Strand=Plus/Plus Query 21461 CCGAACGGCATGATGGCCGCGTTCGTGGGTAAGAAGGTCTATTTTTGCGAACCCTACCGG 21520 || |||||||||||||| |||||||| || ||| | || ||||||||||||| | Sbjct 422648 CCAAACGGCATGATGGCGGCGTTCGTCGGCCGCAAGCTGATGTTCTGCGAACCCTACCTG 422707 Query 21521 CCGCACGCATGGCCGGAAAAGTA-CATCATGACCGTGGATTACAACGTCGTCGGGCTGGC 21579 || || || |||||| ||||| || | | |||||||| || | |||| |||||||| Sbjct 422708 CCCCATGCCTGGCCGACCAAGTATCAGC-TCACCGTGGACTATCCCATCGTGGGGCTGGC 422766 Query 21580 CGCGTTCGGATCCTCGCTGGCCGTGATGACGGAGGGAATGCCCTACGTCATGCAGGGTAC 21639 || ||||| ||| || || |||||||| || | |||||| || | ||||| || Sbjct 422767 AGCCTTCGGCTCCATCCTCGCGGTGATGACCACCGGCACGCCCTATGTGGTTCAGGGCAC 422826 Query 21640 CGCCCCGGACAACATGGTCTCGGAACGTATCGAGGTGAACCTTCCGTGTGTGACCGCTGC 21699 | || |||| |||| | ||| | || ||| || ||| | |||| | Sbjct 422827 CCAGCCCGACACGATGGCCGTGGAGAAGGTGGAAAGCGCCCTGCCCTGTCTTGCCGCAGA 422886 Query 21700 CGGCATCGTGGATCTGGGCTAT 21721 ||||||||||||||||| ||| Sbjct 422887 GGGCATCGTGGATCTGGGATAT 422908 Score = 86.0 bits (94), Expect = 2e-12 Identities = 91/118 (77%), Gaps = 3/118 (3%) Strand=Plus/Plus Query 32876 TGGCGGATCGTGCGGACCTGCTGGGCGCGGTTCGCCTGCCGAACAACGCCTTTGCCAAGA 32935 ||||||||||||| || ||| | || || || | ||||| |||| || |||| |||| Sbjct 432877 TGGCGGATCGTGCCGATCTGGTCGGTGCCGTCAGGCTGCCAAACA-CGGCTTT--CAAGG 432933 Query 32936 ACGCCGGCACTGAGGTGACGACCGACATTATCTTCCTGCGCAAGCGCGCTGAAGGTGA 32993 | |||||| ||||| || || ||||| ||| |||||||||||||| | || ||||| Sbjct 432934 AAAACGGCACCGAGGTCACCACAGACATCATCGTCCTGCGCAAGCGCACCGATGGTGA 432991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 193747632017632