Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_017972.1 Length=280538 Score E Sequences producing significant alignments: (Bits) Value seq13922 120 5e-22 seq4054 109 1e-18 >seq13922 Length=43809 Score = 120 bits (132), Expect = 5e-22 Identities = 133/175 (76%), Gaps = 2/175 (1%) Strand=Plus/Plus Query 22968 TTCGCACTCTTCATCAGATTCAAAGAACAGAATTTGTGCGCAACCTTCGCCAGCGTAGAT 23027 ||| ||| | ||||| ||||||||| || ||||||||| |||||| || ||||| || Sbjct 12424 TTCACACACCTCATCGCTTTCAAAGAAAAGCATTTGTGCGACACCTTCACCTGCGTAAAT 12483 Query 23028 CAGTGCCGGGCTTGGTGTGGTATTGGAAAACTCCAGAGTAAGCGAG-CCTTTCCATTCTG 23086 ||||||| ||| || || |||||||| || || | || | |||| ||| |||| Sbjct 12484 ACGTGCCGGTAAATTTGTTGTGTTTGAAAACTCAAGCGTTA-CGTGACCTTCCCACTCTG 12542 Query 23087 GTTCCAGCGGCGTGACGTTTACGATGATGCCGCAACGCGCATACGTCGATTTGCC 23141 |||| | ||||| || ||||| || ||||||||||||||||| || ||||| || Sbjct 12543 GTTCTAAAGGCGTTACATTTACAATAATGCCGCAACGCGCATAGGTTGATTTACC 12597 >seq4054 Length=113499 Score = 109 bits (120), Expect = 1e-18 Identities = 162/222 (73%), Gaps = 12/222 (5%) Strand=Plus/Plus Query 22968 TTCGCACTCTTCATCAGATTCAAAGAACAGAATTTGTGCGCAACCTTCGCCAGCGTAGAT 23027 ||| || ||||||| ||||||||| || ||||||||| ||| || || || ||||| Sbjct 33044 TTCACATACTTCATCGCTTTCAAAGAAAAGCATTTGTGCGACACCCTCACCCGCATAGAT 33103 Query 23028 CAGTGCCGGGCTTGGTGTG--GTATTGGAAAACTCCAGAGTAA-GCGAGCCTTTCCATTC 23084 | || || | ||| || ||||||||||| || | ||||| | || |||| ||| || Sbjct 33104 ACGCGCAGG--TAGGTTTGTAGTATTGGAAAATTCTAAAGTAACGTGA-CCTTCCCACTC 33160 Query 23085 TGGTTCCAGCGGCGTGACGTTTACGATGATGCCGCAACGCGCATACGTCGATTTGCCGAG 23144 || || | |||||| || ||||| || || |||||||||||||| ||||| || || | Sbjct 33161 AGGCTCTAACGGCGTCACATTTACAATAATACCGCAACGCGCATAAGTCGACTTACCCAA 33220 Query 23145 GCAGATAAC--TAA-TACGTCACGCGGAATGTTGAAGTGTTC 23183 || ||| ||| ||| | |||||||| ||||| ||| Sbjct 33221 ACA---AACGGTAAGTACATTTCGCGGAATACGGAAGTATTC 33259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 895571366498880