Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_017981.1 Length=49981 Score E Sequences producing significant alignments: (Bits) Value seq164795 168 2e-37 seq50 161 3e-35 seq34866 123 8e-24 seq4461 105 2e-18 >seq164795 Length=1075 Score = 168 bits (186), Expect = 2e-37 Identities = 240/333 (72%), Gaps = 6/333 (2%) Strand=Plus/Plus Query 25944 GCCGATCATCTGCATGGTTCCGCCAACGTTGACCACAATTTCAGTGGTGTAGCGCTCAAC 26003 ||||| || ||||||||| || | || ||| | ||||| |||||||| |||| | Sbjct 314 GCCGAGCAGCTGCATGGTGCCCTGCATGTCGACGATGATTTCGGTGGTGTAACGCTTGAT 373 Query 26004 GCCGTCCTTTTCCCACTTGCGGGTTTTCAGTTGCCCCTCAATGTAAACCTGTGAACCTTT 26063 |||||||||||||||| |||||| | ||| | ||||| ||||| ||||| ||||| || Sbjct 374 ACCGTCCTTTTCCCACTCGCGGGTCTGCAGCTTGCCCTCGATGTACACCTGCGAACCCTT 433 Query 26064 CTTCAGGTACTCGCCCGCGATCTCCGCTACCTTGCCAAACAGCACGACGCGATGCCATTC 26123 |||||| ||||| |||||||| || |||||||| ||||| | ||||| ||||| || Sbjct 434 GCGCAGGTATTCGCCGGCGATCTCGGCGACCTTGCCGAACAGGGCAACGCGGTGCCACTC 493 Query 26124 TGTCACTTCTTTCTTTTCGCCGGTCTGCTTATCGTTCCA--GCTTTCTGAGGTCGCTACG 26181 ||| || ||| | ||||||||||| ||| |||| ||| || ||| || | | Sbjct 494 GGTCTTCTCGACCTTCTGACCGGTCTGCTTGTCGGTCCACTGCTCGCT--GGTGGCCAGG 551 Query 26182 GTAATGTTGGCGACTGCGCCGCCATTAGGCATGTAACGGATCTCTGGATCGT-TCCCCAG 26240 | | ||||| ||| || ||| | |||| ||| || | || || || | || ||| Sbjct 552 CTCAGGTTGGTGACCGCATTGCCGCTGGGCAGGTAGCGTGTTTCCGGGTCCTGGCCGCAG 611 Query 26241 GTTACCGACAAGGATTACTTTATTTACGCCGCG 26273 | | ||||| || || ||||| || || || || Sbjct 612 G-TGCCGACCAGAATGACTTTGTTAACCCCACG 643 >seq50 Length=481860 Score = 161 bits (178), Expect = 3e-35 Identities = 216/298 (72%), Gaps = 7/298 (2%) Strand=Plus/Minus Query 25972 TTGACCACAATTTCAGTGGTGTAGCGCTCAACGCCGTCCTTTTCC---CACTTGCGGGTT 26028 ||| | || ||||| |||||||| ||||| ||||| | || ||| ||||| |||||| Sbjct 154960 TTGGCAACGATTTCGGTGGTGTAACGCTCTACGCCTTGCTGATCCTGCCACTTACGGGTT 154901 Query 26029 TTCAGTTGCCCCTCAATGTAAACCTGTGAACCTTTCTTCAGGTACTCGCCCGCGATCTCC 26088 ||||| | || || || || |||| || ||||| ||| || ||||| || || || Sbjct 154900 TTCAGCTTGCCTTCGATATACACCTTAGAGCCTTTACGCAGATATTCGCCGGCAATTTCT 154841 Query 26089 GCTA--CCTTGCCAAACAGCACGACGCGATGCCATTCTGTCACTTCTTTCTTTTCGCCGG 26146 || | | || ||| ||||| || |||||||| || |||||| ||||||||| Sbjct 154840 GCCAGACGCTGGTAAATT--ACGACCCGGTGCCATTCGGTTTGCTCTTTCATTTCGCCGG 154783 Query 26147 TCTGCTTATCGTTCCAGCTTTCTGAGGTCGCTACGGTAATGTTGGCGACTGCGCCGCCAT 26206 | ||||| ||||||||||| |||||||| | | | | ||| ||||| |||||||| | Sbjct 154782 TAGCTTTATCTTTCCAGCTTTCAGAGGTCGCAATGCTCAGGTTAGCGACGGCGCCGCCCT 154723 Query 26207 TAGGCATGTAACGGATCTCTGGATCGTTCCCCAGGTTACCGACAAGGATTACTTTATT 26264 ||||| ||||||| || ||||| | ||||| ||||||| | || ||||| || Sbjct 154722 GCGGCATATAACGGACTTCCGGATCCTGGCCCAGATTACCGATTAAAATGACTTTGTT 154665 >seq34866 Length=13211 Score = 123 bits (136), Expect = 8e-24 Identities = 170/238 (71%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 26038 CCCTCAATGTAAACCTGTGAACCTTTCTTCAGGTACTCGCCCGCGATCTCCGCTACCTTG 26097 || || ||||| || ||||||||||| ||||| || || || | || |||| ||| Sbjct 5711 CCTTCGATGTACACTTGTGAACCTTTACGAAGGTATTCACCAGCAACTTCTGCTAGTTTG 5770 Query 26098 CCAAACAGCACGACGCGATGCCATTCTGTCACTTCTTTCTTTTCGCCGGTCTGCTTATCG 26157 ||||| | |||||| || |||||||| || |||| | ||| || || | ||||| Sbjct 5771 CCAAATAACACGACACGGTGCCATTCAGTACGCTCTTGCATTTGCCCTGTGTTTTTATCT 5830 Query 26158 TTCCAGCTTTCTGAGGTCGCTACGGTAATGTTGGCGACTGCGCCGCCATTAGGCATGTAA 26217 |||||||| |||| || || | | | || || || || | |||||||||||| ||| Sbjct 5831 TTCCAGCTATCTGTCGTAGCAATGCTGATATTCGCTACGCCATTGCCATTAGGCATATAA 5890 Query 26218 CGGATCTCTGGATCGTTCCCCAGGTTACCGACAAGGATTACTTTATTTACGCCGCGTG 26275 || | |||||||| | || | ||||| || | ||| ||||| || || ||||||| Sbjct 5891 CGTACTTCTGGATCTTGGCCTAAATTACCAACCAAGATAACTTTGTTCACACCGCGTG 5948 >seq4461 Length=107335 Score = 105 bits (116), Expect = 2e-18 Identities = 178/258 (69%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 26016 CCACTTGCGGGTTTTCAGTTGCCCCTCAATGTAAACCTGTGAACCTTTCTTCAGGTACTC 26075 |||||||||||| | ||| ||||| | |||| || || || || |||||| || Sbjct 84019 CCACTTGCGGGTATGCAGCGAGCCCTCGAGATAAATCTTGGAGCCCTTGCGCAGGTATTC 84078 Query 26076 GCCCGCGATCTCCGCTACCTTGCCAAACAGCACGACGCGATGCCATTCTGTCACTTCTTT 26135 || ||||| ||||| | || | | || |||||||||||||| ||| || | Sbjct 84079 ACCGGCGATTTCCGCCAGGCGACCGTAGAAAACCACGCGATGCCATTCCGTCTGCTCCTG 84138 Query 26136 CTTTTCGCCGGTCTGCTTATCGTTCCAGCTTTCTGAGGTCGCTACGGTAATGTTGGCGAC 26195 | | | ||||| | ||| || |||||| || ||| || ||||| | |||||||| Sbjct 84139 CATGGCTCCGGTATTCTTGTCCCGCCAGCTCTCGCTGGTAGCCACGGTGACATTGGCGAC 84198 Query 26196 TGCGCCGCCATTAGGCATGTAACGGATCTCTGGATCGTTCCCCAGGTTACCGACAAGGAT 26255 |||||||| |||| ||||||| || ||||| |||||| || ||||| || || Sbjct 84199 CGCGCCGCCGGACGGCAGATAACGGACTTCGGGATCACGCCCCAGATTGCCGACCAGAAT 84258 Query 26256 TACTTTATTTACGCCGCG 26273 || || ||||| || || Sbjct 84259 GACCTTGTTTACACCACG 84276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159475541991176