Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_017984.1 Length=46387 Score E Sequences producing significant alignments: (Bits) Value seq1110 114 4e-21 seq100 109 2e-19 >seq1110 Length=205023 Score = 114 bits (126), Expect = 4e-21 Identities = 237/346 (68%), Gaps = 10/346 (3%) Strand=Plus/Plus Query 31922 TTTGAAGGAACT-AGATTAACTGCATATGATGATGGTGTTGGCGTGTGGACTATCGGCAT 31980 ||||||| | || ||||||| | ||||||||||| | ||| |||||||| || || Sbjct 28326 TTTGAAG-ATCTGAGATTAAAATCTTATGATGATGGAGCAGGCACTTGGACTATTGG-AT 28383 Query 31981 A-GGTACAACCATCTACCCAAATGGTACAAAAGTTAAGAAAGGCGATACATGTACATCTG 32039 | || ||||| || || |||||||| | |||||| | ||| || || || || || Sbjct 28384 ATGGAACAACGATTTATCCAAATGGAGTGAGAGTTAAAAGAGGTGAGACCTGCAC---TG 28440 Query 32040 AAC---AAGCAAAAACCTACTTCAAACATGATTTAGTTAAGTTTGAAAATGTTGTAAATG 32096 || |||||||| | || || ||||||||||| | | |||| | | |||||| Sbjct 28441 AAAGTGAAGCAAAAGCTTATTTTCAACATGATTTATTAAGGTTTCAGCGTACAGTAAATC 28500 Query 32097 AATCCGTTAAAGTTCCACTTAGTCAGAATCAATTTGATGCTCTAGTGTCACTGACCTACA 32156 | ||||| ||| || | | || ||||| || ||||| || || ||| |||| || | Sbjct 28501 AGCTTGTTAATGTTTCATTAAAGCAAAATCAGTTCGATGCCCTTGTATCATTGACTTATA 28560 Query 32157 ACATCGGCTCAGGTGCTTTTAAAAATTCAACTTTACTCAAGCTTCTTAACAATGGCGATT 32216 |||| || | ||| |||| || ||||| ||| | ||| ||| || | || || | Sbjct 28561 ACATTGGTGAAAATGCATTTAGAACATCAACATTATTAAAGTATCTAAATATGGGTGAAT 28620 Query 32217 ATCAAGGTGCTGCCGATCAATTCCCAGCATGGAAAAAAGCTGGTGG 32262 || || || ||||| ||||| | ||||| || ||||| || Sbjct 28621 ATTCAGCAGCAGCCGAACAATTTGGGGTTTGGAATAAGGCTGGAGG 28666 >seq100 Length=411593 Score = 109 bits (120), Expect = 2e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 41758 GCTTTAGCTAAAGAGTTTGATTGCCCTGTTTTCTGTTTATCGCAGTTAAGCCGAAAGGTT 41817 || ||||| ||||| | | |||||||| | ||||| ||| | | ||||| | Sbjct 332071 GCATTAGCAAAAGAAATGAACTGCCCTGTAATTGCATTATCTCAGCTCAACCGAAGTCTG 332012 Query 41818 GAGGATAGAGCAGATAAGCGCCCAATGATGAGTGATTTGCGTGAATCTGGCCAAATCGAA 41877 || || | || | || || ||| | ||| ||| |||||||||||||| ||||| Sbjct 332011 GAAAATCGCCCAAACAAACGACCAGTAATGTCTGACTTGCGTGAATCTGGAGCGATCGAG 331952 Query 41878 CAAGATGCCAATACGATTTTATTTATTTATCGTGATGAGGTTTACAACAAACAAAGTAAA 41937 ||||||||| || |||| | ||||||||||||||||||||||| |||||| || |||| Sbjct 331951 CAAGATGCCGATTTGATTATGTTTATTTATCGTGATGAGGTTTATAACAAAGAATCTAAA 331892 Query 41938 GATATTGGGATTGCTGAAATTAT 41960 || ||| | || ||||| || Sbjct 331891 GAGGCTGGAACAGCAGAAATCAT 331869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147999357182168