Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_018269.1 Length=31766 Score E Sequences producing significant alignments: (Bits) Value seq40996 122 2e-23 seq32195 116 7e-22 seq7 93.3 9e-15 seq152 86.0 1e-12 >seq40996 Length=10690 Score = 122 bits (134), Expect = 2e-23 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 25038 TCAGAAATTTCGAAATCACTTAAATCCATGGCGAAAGAATTTAATTGTCCAATGATCGCG 25097 || |||||||| | |||||| || |||| |||||| | |||||||| |||| || Sbjct 1353 TCTGAAATTTCACGAAGCCTTAAAGCCTTGGCCAAAGAAATGAATTGTCCTGTGATTGCA 1412 Query 25098 TTATCACAGCTTAACCGAGGTCTTGAAAACAGACAGGATAAGCGCCCAATTAACTCAGAC 25157 | |||||||||||||| |||| || ||| ||| | || ||||| ||| |||||| Sbjct 1413 CTTTCACAGCTTAACCGTAGTCTAGAGAACCGACCAAACAAACGCCCTGTTATGTCAGAC 1472 Query 25158 TTGCGCGAGTCTGGCGCGATAGAACAGGATGCTGATCTAATCGCATTGATATACCGAGAC 25217 || || || || || ||||| || |||||||| ||| | ||| || || ||||| || Sbjct 1473 TTACGTGAATCAGGAGCGATCGAGCAGGATGCCGATTTGATCATGTTCATCTACCGTGAT 1532 Query 25218 GAAGTGTATAAC 25229 ||||| |||||| Sbjct 1533 GAAGTCTATAAC 1544 >seq32195 Length=14812 Score = 116 bits (128), Expect = 7e-22 Identities = 223/329 (68%), Gaps = 0/329 (0%) Strand=Plus/Minus Query 24948 CGCGAACAGGGCAGTATTGACTTGGTGATTGTCGATTATTTGCAGCTTATGCGAATTGAA 25007 ||||| || ||| ||||| || | || |||||||| |||||||| ||||| | | Sbjct 1622 CGCGACCATGGCGGTATTAGTATGATCATGGTCGATTACTTGCAGCTAATGCGTGTGCCA 1563 Query 25008 GGGTTCAAAGAAGGCCGAGCTAATGAAGTATCAGAAATTTCGAAATCACTTAAATCCATG 25067 | || || ||| || || | | ||||| || ||| | ||| | || Sbjct 1562 AGCTTGTCGGATAACCGTACTTTAGAGATCGCTGAAATCTCTCGTTCATTAAAAGCACTG 1503 Query 25068 GCGAAAGAATTTAATTGTCCAATGATCGCGTTATCACAGCTTAACCGAGGTCTTGAAAAC 25127 || |||||| | | ||||| | || || |||| ||||||||||| || || | Sbjct 1502 GCAAAAGAACTGCAGTGTCCGGTTATTGCACTATCGCAGCTTAACCGTACCCTAGAGCAA 1443 Query 25128 AGACAGGATAAGCGCCCAATTAACTCAGACTTGCGCGAGTCTGGCGCGATAGAACAGGAT 25187 | ||||| |||||||| ||||| ||||| || || || ||| | || || |||||| Sbjct 1442 CGTGCCGATAAACGCCCAATCAACTCCGACTTACGTGAATCAGGCTCAATCGAGCAGGAT 1383 Query 25188 GCTGATCTAATCGCATTGATATACCGAGACGAAGTGTATAACCCCGACAGCTCTGACAAA 25247 || || ||||| || || ||||| || |||||||||||| ||||| | || ||| Sbjct 1382 GCCGACTTAATCATGTTTATTTACCGTGATGAAGTGTATAACGAAGACAGTGCAGAAAAA 1323 Query 25248 GGCATTGCCGAGATTATCATTGGCAAACA 25276 ||| | ||||| || ||||| || || || Sbjct 1322 GGCGTGGCCGAAATCATCATAGGTAAGCA 1294 >seq7 Length=747525 Score = 93.3 bits (102), Expect = 9e-15 Identities = 168/246 (68%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 25041 GAAATTTCGAAATCACTTAAATCCATGGCGAAAGAATTTAATTGTCCAATGATCGCGTTA 25100 |||||||| || | ||| || |||| |||||||| || || | ||||| || Sbjct 720343 GAAATTTCCCGCTCGTTAAAAGCCCTGGCAAAAGAATTGAAAGTGCCGGTAGTCGCGCTA 720284 Query 25101 TCACAGCTTAACCGAGGTCTTGAAAACAGACAGGATAAGCGCCCAATTAACTCAGACTTG 25160 || ||||||||||| || ||| | | |||||||| ||| ||||||| |||||| Sbjct 720283 TCGCAGCTTAACCGTTCACTGGAACAACGCGCCGATAAGCGGCCAGTTAACTCGGACTTG 720224 Query 25161 CGCGAGTCTGGCGCGATAGAACAGGATGCTGATCTAATCGCATTGATATACCGAGACGAA 25220 || || || || |||||||||||||||| ||| | || || || || || || || Sbjct 720223 CGGGAATCGGGTTCGATAGAACAGGATGCGGATTTGATTATGTTTATCTATCGTGATGAG 720164 Query 25221 GTGTATAACCCCGACAGCTCTGACAAAGGCATTGCCGAGATTATCATTGGCAAACACAGG 25280 || || || || | | || ||||| | || || ||||| || || || || || Sbjct 720163 GTCTACCACGAGGATACAGCAGATAAAGGTACGGCTGAAATTATTATCGGTAAGCAGCGG 720104 Query 25281 AATGGC 25286 || ||| Sbjct 720103 AACGGC 720098 >seq152 Length=367798 Score = 86.0 bits (94), Expect = 1e-12 Identities = 124/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 25055 ACTTAAATCCATGGCGAAAGAATTTAATTGTCCAATGATCGCGTTATCACAGCTTAACCG 25114 ||| ||| ||||||| |||||||||||||| || || |||||| ||||| ||||| Sbjct 267354 ACTAAAAGCCATGGCCAAAGAATTTAATTGCGTCATAGTCCTGTTATCTCAGCTCAACCG 267295 Query 25115 AGGTCTTGAAAACAGACAGGATAAGCGCCCAATTAACTCAGACTTGCGCGAGTCTGGCGC 25174 | || || || ||| | || | ||||| | || || || ||||| || || || Sbjct 267294 TGAACTAGAGAAGCGACCAAACAAAAGACCAATGATGTCGGATTTACGCGAATCAGGTGC 267235 Query 25175 GATAGAACAGGATGCTGATCTAATCGCATTGATATACCGAGACGAAGTGTATAAC 25229 || ||||| ||||| || | ||| || | ||| |||||||||| |||||| Sbjct 267234 AATTGAACAAGATGCCGACCAAATTATTTTCTTGTACAGAGACGAAGTTTATAAC 267180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 101312295943296