Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_018863.1 Length=162596 Score E Sequences producing significant alignments: (Bits) Value seq11470 89.7 5e-13 >seq11470 Length=53368 Score = 89.7 bits (98), Expect = 5e-13 Identities = 173/250 (69%), Gaps = 4/250 (2%) Strand=Plus/Minus Query 10506 TGGAATCCAAGTACATTCGGTAGCGTCGCGTTACCTCCGTGTCATGTAGCGTTCCAGTTT 10565 |||||||||| | | |||| || || ||||| || |||||| |||||| ||| Sbjct 34496 TGGAATCCAAATGAAGCAGGTAAGGTTGCTTTACCACCTTGTCATACCCTGTTCCAATTT 34437 Query 10566 TATGTGAATGATGGTAAATTATCATGT-AAGTTCATCATGCGCTCGT-CAGACGTATTTT 10623 | |||| ||||| ||| | || || || || |||| || | || |||| ||||||| Sbjct 34436 TTTGTGCATGATAACAAACTCTCTTGCCAACTTTATCAA-CG-TAGTGCAGATGTATTTT 34379 Query 10624 TAGGACTACCGTTCAATATCGCTAGTTATGCATTAGCTACACATGTAGTTGCGAAGATGT 10683 |||| | || || ||||| ||||| ||||| || || ||| | |||| | | | Sbjct 34378 TAGGTGTGCCATTTAATATTGCTAGCTATGCCCTACTCACCCATATGATTGCACAAGTCT 34319 Query 10684 GCGACTTAGAAGTAGGAGAACTTATTTACAGTGGTGGCGATATACATTTATACTTAAACC 10743 | | ||||| || || || || ||| | |||||| |||| ||| ||||| ||||| Sbjct 34318 GTGGTTTAGATGTTGGGGACTTTGTTTGGACTGGTGGTGATACACACTTATATGCAAACC 34259 Query 10744 ACTTAAAGCA 10753 |||| |||| Sbjct 34258 ACTTTGAGCA 34249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 519007262271360