Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_019398.1 Length=178193 Score E Sequences producing significant alignments: (Bits) Value seq5 235 6e-57 seq100896 111 2e-19 seq51 87.8 2e-12 >seq5 Length=869209 Score = 235 bits (260), Expect = 6e-57 Identities = 369/526 (70%), Gaps = 18/526 (3%) Strand=Plus/Plus Query 40714 TCATTACCTACGCCTATTATGGCGGGTGTGCGTACTCCTACGCGTCAGTTCTCCAGTTGT 40773 ||| | || || ||||||||| |||| |||||||| || || ||||||||| | || Sbjct 710759 TCACTGCCGACACCTATTATGTCGGGCGTGCGTACCCCAACCCGTCAGTTCAGCTCCTGC 710818 Query 40774 GTTGTAATCGAATCGGGTGATTCTCTGGGTTCTCTGAACGCTGTTACGTCC---GCGATC 40830 || | || || | ||||| |||| ||| | || || || ||| || || Sbjct 710819 GTACTGATTGAGTGTGGTGACAGCCTGGATTCGATCAATGCC---ACCTCCAGTGCCATT 710875 Query 40831 GTGAAGTATATCTCTCAACGTGCTGGTATTGGTGTCAACGCCGGACACATTCGCGCTATG 40890 || || || | || || || || ||||||||| | ||||| || | ||||||||| | Sbjct 710876 GTAAAATACGTGTCGCAGCGCGCAGGTATTGGTATTAACGCAGGCCGTATTCGCGCTTTA 710935 Query 40891 GGTTCAAAAATCCGTGGTGGTGAAGCAGTACATACAGGCGTTATCCCGTTCTGGAAACAC 40950 ||| ||||||| ||| ||||| | ||||| ||| ||||||||| | || || Sbjct 710936 GGTAGCCCAATCCGTAATGGCGAAGCCTTTCATACTGGCTGTATCCCGTTTTATAAGCAT 710995 Query 40951 ATTCAGACGGCGGTTAAATCCTGTTCCCAGGGCGGTGTTCGTGGTGGTGCAGCAACCCTG 41010 | ||||| || || ||| ||| || || |||||||| ||||||||||| || |||||| Sbjct 710996 TTCCAGACCGCAGTAAAAAGCTGCTCGCAAGGCGGTGTGCGTGGTGGTGCCGCCACCCTG 711055 Query 41011 TATTATCCGATCTGGCATCTTGAAGTTGAAAACCTGTTGGTTCTGAAAAATAACCGTGGC 41070 | || || | |||||||| ||||| ||| ||| |||| |||||||||||||| || Sbjct 711056 TTCTACCCCTTGTGGCATCTGGAAGTGGAATCGCTGCTGGTACTGAAAAATAACCGCGGT 711115 Query 41071 GTTGAAGAAAACCGTATTCGTCACCTGGATTATGGCGTACAGCTTAACGATTTGATGTAT 41130 || ||||| ||||| | | || ||||| |||||||| ||| ||||| |||||||| Sbjct 711116 GTAGAAGAGAACCGGGTAAGGCATCTGGACTATGGCGTGCAGTTTAACCGCCTGATGTAT 711175 Query 41131 AAGCGTTTAATCAATAACGATTACATCACTCTGTTCAGCC---CTGACGTTGCGAACGAT 41187 |||| | || || | || || ||||| ||||||||| |||| || || Sbjct 711176 CAGCGCCTGATTAAAGATGACTATATCACCTTGTTCAGCCCCTCTGATGTGCCG------ 711229 Query 41188 CGCCTGTATGACGCGTTCTATCAAGCGGATCAGACTGAGTTTGAAG 41233 | |||||||| || |||| | || |||||| ||||||||| Sbjct 711230 GGGCTGTATGATGCCTTCTTTGAA---GATCAGGAAAAGTTTGAAG 711272 Score = 96.9 bits (106), Expect = 4e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42115 AACAAAGGTTATCTGTCTCATGTAGCGGTTATGCAGAAGTTTGTTGATCAGGCTATCTCT 42174 ||| | ||||||||| | | || || |||||||||| ||| | || ||| | || || Sbjct 712166 AACGATGGTTATCTGACGCTGGTGGCCATTATGCAGAAATTTATCGACCAGACCATTTCG 712225 Query 42175 GCAAACACAAACTATGATCCGGCCAACTTCCCAGATGGTAAAGTGAAATCTGAA-ATCAT 42233 || ||||| ||||||||||||||||| ||| || |||||||| | |||| ||| | Sbjct 712226 GCTAACACCAACTATGATCCGGCCAAGTTCGAAGGCGGTAAAGT-ACCGATGAAGATCCT 712284 Query 42234 CCTTGAAGATCTGCTGTATGCAAACTATTTCGGCATCAAAACGCTGTACTACCACAACAC 42293 || |||||||||| || | | | || | || || |||| || |||||||| Sbjct 712285 GCTGAAAGATCTGCTTACCGCTTATAAGCTGGGTGTGAAGACAATGTATTATCACAACAC 712344 Query 42294 CCGTGACGGTGC 42305 |||||| ||||| Sbjct 712345 CCGTGATGGTGC 712356 Score = 86.0 bits (94), Expect = 7e-12 Identities = 145/207 (70%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 43519 GAAGCGATCCGCTTCTACGTGTCGTTTACCTTCACGTTCAACTTTGCCGAACAAGGCAAG 43578 |||||||||||||| || || ||| ||| || || ||||| || | | | Sbjct 713111 GAAGCGATCCGCTTTTATGTCAGCTTTGCCTGCAGTTTTGCTTTTGCTGAGCGTGAGCTG 713170 Query 43579 ATGGAAGGTAACGCGAAGATCATGCGTCTGATTGCCCGTGATGAAGCACTTCATCAGAAA 43638 |||||||| || || ||||| || || ||||||||||| |||||||| || || | | Sbjct 713171 ATGGAAGGGAATGCTAAGATTATCCGGCTGATTGCCCGCGATGAAGCGCTACACCTCACC 713230 Query 43639 GGCACTCAAAGCAAGATCCG---ACTCTGGCAGATGGGTAAAGATGACCCAGAAATGGCG 43695 ||||||| |||| | | | |||||| | ||| | ||||| || ||||||||| Sbjct 713231 GGCACTC--AGCATATGCTGAATATTCTGGC-CAGCGGTGATGATGATCCGGAAATGGCG 713287 Query 43696 GAAATCGCTTACCAGTACGAAGAAGAA 43722 ||||| || | ||| |||||| ||| Sbjct 713288 GAAATTGCCAAAGAGTGCGAAGAGGAA 713314 >seq100896 Length=2131 Score = 111 bits (122), Expect = 2e-19 Identities = 210/303 (69%), Gaps = 12/303 (4%) Strand=Plus/Plus Query 42952 CGATACGAAGAACAAAAGCATCGTGTGTTTGAAAATCTTACAGAAAAACAGTTATCCTTC 43011 || ||||| |||||||| | | | | || ||||| || | ||||| || | || ||| Sbjct 608 CGTTACGACCAACAAAAGTACCCTATCTTCGAAAAGCTAATCGAAAAGCAACTTTCGTTC 667 Query 43012 TTTTGGCGTCCAGAAGAAATTGACTTATCGATCGACCGTATGCAGTAC---GCGAAAATG 43068 ||||||||||| |||||| |||| || | |||||| | | | | ||| | Sbjct 668 TTTTGGCGTCCTGAAGAAGTTGATGTAAGTAAAGACCGTCTTGACTTCCAAGCGTTA--- 724 Query 43069 CCGGAACACGAAAAAATCATTTTCGATTCA--AACCTACAATATCAAACCCTGTTGGATA 43126 || ||||||||||| ||| || || | ||| || |||||||||| || | |||| Sbjct 725 CCAGAACACGAAAAGCACATATTT--TTAAGTAACTTAAAATATCAAACGCTTCTTGATA 782 Query 43127 CCATTCAGGGACGCGGCCCTAACCTGGCTTTCCTCCCTATCGCTTCCGATGTCTCAATG- 43185 | || || || |||||| | || || | ||||| | || || || | | Sbjct 783 GTGTACAAGGCCGTTCACCTAACGTTGCGTTATTACCTATTGTGTCT-ATTCCTGAGTTA 841 Query 43186 GAAACGTGGATCGAAACATGGGCGTTCAGTGAAACAACCCATAGCCGCAGTTACACGCAC 43245 ||||| ||||| ||||||||||||||||||||||| | |||||||| ||||||||| Sbjct 842 GAAACTTGGATTGAAACATGGGCGTTCAGTGAAACCATTCATAGCCGTTCATACACGCAC 901 Query 43246 ATT 43248 ||| Sbjct 902 ATT 904 Score = 82.4 bits (90), Expect = 9e-11 Identities = 136/194 (70%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 42114 AAACAAAGGTTATCTGTCTCATGTAGCGGTTATGCAGAAGTTTGTTGATCAGGCTATCTC 42173 |||| | |||||||| | ||| | ||||||| || || ||||| || | ||||| Sbjct 192 AAACGATGGTTATCTACAACTTGTTGGTATTATGCAAAAATTCGTTGACCAAACGATCTC 251 Query 42174 TGCAAACACAAACTATGATCCGGCCAACTTCCCAGATGGTAAAGTGAAATCTGAA-ATCA 42232 ||||||||| ||||||||||| | || | | || |||||||| | | |||| | Sbjct 252 TGCAAACACTAACTATGATCCATCTAAGTACGAAGGCGGTAAAGT-ACCTATGAAGGTGC 310 Query 42233 TCCTTGAAGATCTGCTGTATGCAAACTATTTCGGCATCAAAACGCTGTACTACCACAACA 42292 | | |||| || ||| ||| | | | || | ||||| |||||||| ||||||| Sbjct 311 TATTAAAAGACCTACTGACTGCGTATAAACTTGGTGTTAAAACTCTGTACTATCACAACA 370 Query 42293 CCCGTGACGGTGCA 42306 | ||||| |||||| Sbjct 371 CACGTGATGGTGCA 384 >seq51 Length=473680 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 49474 AATTCCGGCCCTTTAGCTTAATTGGTTAGAGCGGGTGACTCATAATCGCGCGGTTGCTGG 49533 ||||| ||||| ||||| | ||||||||||| |||||||||||| |||| ||||| Sbjct 469222 AATTCAGGCCCCATAGCTCAGTTGGTTAGAGCACTCGACTCATAATCGATCGGTCGCTGG 469281 Query 49534 TTCAAGTCCAGCAGGGGCCACCA 49556 ||| |||||||| |||||||||| Sbjct 469282 TTCGAGTCCAGCTGGGGCCACCA 469304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568805216635680