Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_019399.1 Length=167396 Score E Sequences producing significant alignments: (Bits) Value seq5 118 1e-21 seq5373 96.9 4e-15 >seq5 Length=869209 Score = 118 bits (130), Expect = 1e-21 Identities = 268/403 (67%), Gaps = 0/403 (0%) Strand=Plus/Minus Query 138538 TGAACGCCATAATCCATATGACGGATACGGTTTTCTTCTACGCCTTTGTTATTTTTCAAA 138597 || |||||||| |||| ||| | | ||||| |||||||| || ||||||||||| Sbjct 711156 TGCACGCCATAGTCCAGATGCCTTACCCGGTTCTCTTCTACACCGCGGTTATTTTTCAGT 711097 Query 138598 ACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCA 138657 || || || ||| ||||||| |||||| | || || | || || || || ||| Sbjct 711096 ACCAGCAGCGATTCCACTTCCAGATGCCACAAGGGGTAGAACAGGGTGGCGGCACCACCA 711037 Query 138658 CGAATTCCACCCTGTGAGCATGATTTAACTGCAGTCTGAAAATGTTTCCAAAAAGGAATA 138717 || | || || || ||||| ||| ||||| ||||| ||||| || |||| || ||| Sbjct 711036 CGCACACCGCCTTGCGAGCAGCTTTTTACTGCGGTCTGGAAATGCTTATAAAACGGGATA 710977 Query 138718 ACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTCAGCACGAATCATACCA 138777 |||||||| |||| || | | || |||| ||| ||||| || Sbjct 710976 CAGCCAGTATGAAAGGCTTCGCCATTACGGATTGGGCTACCTAAAGCGCGAATACGGCCT 710917 Query 138778 ACGTTAATACCAATTCCAGCGCGTTTAGAGATATATTCAACAATTGAAGCGGAAGCCTTG 138837 ||||||||||||| || ||||| | || | |||| ||||| | | ||| | Sbjct 710916 GCGTTAATACCAATACCTGCGCGCTGCGACACGTATTTTACAATGGCACTGGAGGTGGCA 710857 Query 138838 TTGATAGACTTTAATGAATCACCTGCCTCAATAACAACACATGAACTAAACTGTCGAGTC 138897 ||||| || | | ||||| |||||| | || || || || ||||| || || Sbjct 710856 TTGATCGAATCCAGGCTGTCACCACACTCAATCAGTACGCAGGAGCTGAACTGACGGGTT 710797 Query 138898 GGAGTACGACAACCAGCCATAATAGGAGTTGGTAATGAAATCT 138940 || ||||| || | ||||||||| || || | |||||||| Sbjct 710796 GGGGTACGCACGCCCGACATAATAGGTGTCGGCAGTGAAATCT 710754 >seq5373 Length=95907 Score = 96.9 bits (106), Expect = 4e-15 Identities = 122/164 (74%), Gaps = 9/164 (5%) Strand=Plus/Plus Query 68040 AATTGGTCGAGGCAGTAGGGATCGAACCTACGACCCA--GGACTTAGA--AGGTCCTTGC 68095 || |||||| |||||||| ||||||||||||||| || | | | |||| || Sbjct 61884 AAATGGTCGGAGCAGTAGGATTCGAACCTACGACCCCCTGGTCCCAAACCAGGT----GC 61939 Query 68096 TCTTCCTT-CTGAGCTATGCCCCGTAATTGGGGTGACCGATGGGAGTCGAACCCATGACT 68154 || || ||| ||||||| ||| ||||||||||| || |||| |||||||| ||| Sbjct 61940 ACTACCAGGCTGTGCTATGCTCCGAAATTGGGGTGAATGACGGGATTCGAACCCGCGACA 61999 Query 68155 ACGAGAATCACAATCTCGAGTTCTACCAACTGAACTACGGCCAC 68198 || ||||||||||| | | |||||||||||| |||| |||| Sbjct 62000 ACTGGAATCACAATCCAGGGCTCTACCAACTGAGCTACATCCAC 62043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534332656959360