Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_019400.1 Length=147940 Score E Sequences producing significant alignments: (Bits) Value seq95965 105 6e-18 seq5373 96.9 3e-15 seq7 87.8 2e-12 >seq95965 Length=2703 Score = 105 bits (116), Expect = 6e-18 Identities = 243/359 (68%), Gaps = 9/359 (3%) Strand=Plus/Minus Query 49977 TTTTCGATATCGTACTGACCACCAAACGGGTCAATGATCTCACCTGTC-TCAAGGTCTTG 50035 ||||| | ||| | ||| ||| ||| ||||||| || | ||| | || || |||| Sbjct 2201 TTTTCAAGATCCTGCTGGCCAGAAAATGGGTCAA----CTAAGCTGCCATCTTGGGCTTG 2146 Query 50036 AGCCATAGCGTTGATCGTCAGGTCACGACGAGACAGATCCTCCACCAGTGTCACATCGGG 50095 || || ||||| | || || || |||||| | || | | | | ||| ||||| || Sbjct 2145 TGCTATGGCGTTTACGGTGAGATCTCGACGAACTAAGTCTTGCTCTAATGTGACATCCGG 2086 Query 50096 -GCTGAAGAATGTCTCGAAGTCAGTATGACCGTTACCAGTCTTACGCTCAGTACGGGCGA 50154 || || | | |||| |||| | ||| | ||| || ||||| || || || | Sbjct 2085 CGCGAAATCACAAAT-GAAGCCAGTGTAACCTTGACCTTGTTTTCGCTCGGTGCGCGCCA 2027 Query 50155 GAGCATACTCTTCGTTGGTTTCAGGATGCAGGTATACTGGAAAAGCAGCGCCAACCTGGG 50214 | ||||| ||||| || ||| || || | |||| |||||| | ||||| || Sbjct 2026 GCGCATATTCTTCTTTACTTTGTGGGTGTAAAAATACCGGAAAATCTTTACCAACTTGT- 1968 Query 50215 TGA-AACCTTTATTGATCATTTCTTCGTGCGTTGCACCCACAACCACGTAGTCACGGTCA 50273 ||| |||||| |||||| || ||| |||| ||||| || ||||| ||||| || || Sbjct 1967 TGATAACCTTGGCTGATCAGTTGTTCTGGCGTGGCACCAACTACCACATAGTCGCGTTCT 1908 Query 50274 TGAACTTCACGACCAAGCAAACCATCACGCACAGCGCCACCTACCAGATATACCTTCAT 50332 | ||| ||||||||||| | | || | || |||||||| || | ||| |||| ||| Sbjct 1907 TTAACGTCACGACCAAGTAGGGCGTCTCTGACTGCGCCACCGACTAAATAAACCTGCAT 1849 >seq5373 Length=95907 Score = 96.9 bits (106), Expect = 3e-15 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 82545 TAAAGGTGCAGTTGAATGCCTATGGGACATCTTTGGTGGGGAAGTTAACTCCAAAGGTTA 82604 |||||||||||| |||| ||||||| || ||||| || || | | |||| || Sbjct 20063 TAAAGGTGCAGTGCAATGTTTATGGGAAATTTTTGGCGGCACAGAAACAGCTCAAGGCTA 20122 Query 82605 CAAGGTTCTTGATACTCACGTAGGCCTGATCTACGGTGACTCGATTACCGTTGCTCGTGC 82664 || || || || | || || ||||||| ||||||||||||||| | | ||||| Sbjct 20123 TAAAGTACTGAATGAGCGTGTCGGTTTGATCTATGGTGACTCGATTACCCTAGAACGTGC 20182 Query 82665 AAAAGATATCTTTGAACGTCTGAAAGATAAAGGTTTTGCATCCAGCAATATCGTGTTTGG 82724 | || ||||||| || || || ||| ||||| ||||| |||| |||| | || ||||| Sbjct 20183 ACAAAATATCTTAAAAGGTTTGGAAGCCAAAGGCTTTGCTTCCAACAATCTGGTTTTTGG 20242 Query 82725 TGTTGG 82730 |||| Sbjct 20243 AATTGG 20248 >seq7 Length=747525 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 85029 TTTGGGGTATTAACTCAGCGGTTAGAGTAGCGGCCTCTTAAGCCGAAGGTCGAAGGTTCG 85088 |||||| |||| |||||| | ||||| ||||| || |||| ||| |||||| |||||| Sbjct 152218 TTTGGGTCATTAGCTCAGCTGGTAGAGCAGCGGACTTTTAATCCGTTGGTCGATGGTTCG 152159 Query 85089 AATCCTTCATGCCCCACCAAACA 85111 ||||| ||||| ||||||||||| Sbjct 152158 AATCCATCATGACCCACCAAACA 152136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472213723824000