Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_019405.1 Length=215710 Score E Sequences producing significant alignments: (Bits) Value seq12585 430 2e-115 seq52710 141 1e-28 seq1 96.9 5e-15 seq89615 89.7 7e-13 seq144939 87.8 2e-12 seq103 87.8 2e-12 seq16267 84.2 3e-11 >seq12585 Length=48618 Score = 430 bits (476), Expect = 2e-115 Identities = 724/1037 (70%), Gaps = 23/1037 (2%) Strand=Plus/Plus Query 136643 CCTAGCCCTTCACGCAGAGGACTTGCTTGAGGGTGTGGACGATGTCCACGAGGTCCTTCT 136702 |||| || |||||||| | || || ||||| || | | ||||| || || || Sbjct 43192 CCTATCCTTTCACGCATACCACCTGTCGCAGGGTATGCATCACTTCCACCAGCTCGCGCT 43251 Query 136703 GGGCCTCCATGACCGCGTCGATGTCCTTGTAGGCCATCGGGATTTCGTCGATCACGCCAG 136762 |||| ||||| ||| |||||||||||||||||||||||||||||||||||||||| | | Sbjct 43252 GGGCGTCCATTACCTGGTCGATGTCCTTGTAGGCCATCGGGATTTCGTCGATCACGTCGG 43311 Query 136763 CGTCCTTGCGGCACTCCACGCCCTCGGTGGCCTTGATCTGGTCCTCCAGGGTGAAGGTCG 136822 ||||||| ||||| || ||| | ||||||||||||||||| |||| ||| || | Sbjct 43312 CGTCCTTTCGGCATTCGACGTGGGCCGTGGCCTTGATCTGGTCGTCCACGGTAAACAGCT 43371 Query 136823 CCTTGGCCTGGGTCCGCGACATCGTCCGGCCCGCGCCGTGCGAGCACGAGCAGAACGAGT 136882 ||| |||| ||| || ||| || ||||| |||||||| ||| |||||||||| | Sbjct 43372 TCTTCGCCTTGGTACGGCTCATGGTTCGGCCGGCGCCGTGGCTGCAGGAGCAGAACGCTT 43431 Query 136883 CCGCATTGCCCTTGCCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATGATCC 136942 || | || ||| |||||| |||||| || |||||||||||| |||||||||||||||| Sbjct 43432 CCTCGTTCCCCAGGCCGCGTACGATGAAGCTCTTGGCCCCCATGGAGCCGGGGATGATCC 43491 Query 136943 CGAACTGGTCCTTCTGCGCCGACACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTCGA 137002 | | || |||||| |||||||||||| || || || || || | ||| || ||| Sbjct 43492 CCAGCTCACCCTTCTTCGCCGACACCGCACCTTTTCGCGTTACCAGCACCTCTTCACCGA 43551 Query 137003 AGTGGAATTCCTTCTGGACGTAGTTGTGGTGGCAGTTCACCGCTTCCTTGTCCGTCTTGA 137062 ||||| |||||||| |||||||||||||| |||||||| |||||| || | || Sbjct 43552 AGTGGCGCTCCTTCTGCACGTAGTTGTGGTGACAGTTCACTGCTTCCAGCGCCACGTCGA 43611 Query 137063 ACGGC-GGCAGGCCCGACGCC-CGCATGGCCTCCAGGACCCGGACCATCATCATCTCGCG 137120 ||||| || | | ||||| || ||| | | || | |||||||| |||| Sbjct 43612 ACGGCTTGCTGATC--ACGCCTCGTGCCGCCGCGATCACTGCGTGCATCATCAGTGCGCG 43669 Query 137121 GTTGATCCGCGCGAAGTCCTGGCCCCAGGCGACGGCTTCCACGTAGTCGTGGAACT-CCG 137179 ||| | ||||||||||| ||||| | ||||||||||||||||||| ||| | | | Sbjct 43670 GTTCTGCTTGGCGAAGTCCTGCGCCCAGCCCACGGCTTCCACGTAGTCGTTGAAGTGCTG 43729 Query 137180 GCTCGCCTTCGCAGAGCCAAGCAAGGTCCTTGTCCAGCGGCTTGCGCCCGTCACGACGCA 137239 ||| |||||| || | || ||||| || | || | ||| || | | Sbjct 43730 GCT-GCCTTCTTCGAAGTAGGCCAGGTCGCGGTGCGGCAGGTTG---GCGATGTGTTGGT 43785 Query 137240 GCATCATC-TCCTTGGCCTTCTCGATGAAGATGCGGCCGATGGTGTTGCCGACGCCGCGC 137298 |||| ||| ||| |||| |||||||| | | ||||||| ||| || |||||||| Sbjct 43786 GCAT-ATCGGCCTGGGCCAGTTCGATGAACAGGTTACCGATGGCGTTACCTACGCCGCGT 43844 Query 137299 GAGCCCGAGTGGAGCATCACCCAGACGCGCTGGTCCTCGTCGAGGCAGACCTCGATGAAG 137358 || || ||| ||||| | ||| ||||| | | | || || |||||||||||||||||| Sbjct 43845 GATCCGCTGTGCAGCATGAACCACACGCGGTTGGCTTCATCCAGGCAGACCTCGATGAAG 43904 Query 137359 TGGTTGCCGCCGCCCAGGGTGCCCAGTTGGACCACGCTGTTGGCGTTCTTCAGCGCCGGG 137418 ||||| ||| |||||||| ||||| || | |||||| |||| |||| |||| Sbjct 43905 TGGTTACCGGTTCCCAGGGTTCCCAGGTGTTTGCGGTTGTTGGTCTTCTCCAGCTTCGGG 43964 Query 137419 TACTTCTCGCAGAGCTTGTCGAACCGCGCCTCCAGGCCCGAATCGACCCACTTGCGCAGG 137478 | ||| ||| || | | ||| ||| | ||| |||| ||| | | | Sbjct 43965 TGCTTGTCGGTGATCAGCTTGAAGCGCTCGCTCAGCGCCGA------CCAGGCGTGGTCG 44018 Query 137479 ATCGAGTTGGGGA--TGCCGCTGCGCCCGTTCCAGCCGCCCGACGGACCCGG----CCCG 137532 || | || | | | | || | || || || || ||||| | | Sbjct 44019 GTCAGCTCCGGCACGTTCTCCCAGGCACCTTTATCGCGGGCGCCGCGCCCGGAAGTACGG 44078 Query 137533 CCGTGCGGGACGGCGTGCTCGATCAGCGAGCGAAGCTTGGACAGGCTGTCGGGAAGGTCC 137592 |||||||| ||||| | |||||| | ||| || || |||| | || || ||||| Sbjct 44079 CCGTGCGGCACGGCCTTCTCGATGGCGGCGCGCAGGCCGGCCAGGTTATCCGGCAGGTCG 44138 Query 137593 GACGCGGTCAGGCTGGTGCGGACCGCCATCATGCCGCAGCCGATGTCGACGCCGACGGCG 137652 || |||| ||||||| | || ||||||||||| ||||| || || || ||||| Sbjct 44139 TGGGCCATCAGCGTGGTGCGCGCGGCGATCATGCCGCAACCGATATCCACACCAACGGCC 44198 Query 137653 GCCGGGATGATCGCGCC 137669 |||||||| |||||||| Sbjct 44199 GCCGGGATAATCGCGCC 44215 >seq52710 Length=7253 Score = 141 bits (156), Expect = 1e-28 Identities = 211/297 (71%), Gaps = 3/297 (1%) Strand=Plus/Plus Query 136921 CCCATCGAGCCGGGGATGATCCCGAACTGGTCCTTCTGCGCCGACACCGCGCCCTTGCGG 136980 ||||| |||||| ||||| || | | | ||| |||| |||||||||||||||| Sbjct 15 CCCATGCTGCCGGGAATGATGCCAAGTTCGCCCTCGCGCGCACTCACCGCGCCCTTGCGG 74 Query 136981 GTCACGAAGACCCACTCGTCGAAGTGGAATTCCTTCTGGACGTAGTTGTGGTGGCAGTTC 137040 ||||| | | || | || ||| |||||||| ||||||||||||||||||||| Sbjct 75 GTCACCAGCAGTTCCTGGCCGTGGTGCGTCTCCTTCTGTACGTAGTTGTGGTGGCAGTTC 134 Query 137041 ACCGCTTCCTTGTCCGTCTTGAACGGCGGCAGGCCCGACGCCCGCATGGCCTCCAGGACC 137100 ||||| | || || |||| ||||| ||| | | |||| | |||| ||| Sbjct 135 ACCGCCATCGCCGCCAGCTGGAACTTCGGCAA--CCGGTGGC-GCATCTCGGCCAGCACC 191 Query 137101 CGGACCATCATCATCTCGCGGTTGATCCGCGCGAAGTCCTGGCCCCAGGCGACGGCTTCC 137160 || ||||||| ||||||||| ||| ||| ||||||| |||| | || ||||| Sbjct 192 CGCGACATCATCGCCTCGCGGTTCTGCCGGGCGTAGTCCTGTGCCCACGACACCGCTTCG 251 Query 137161 ACGTAGTCGTGGAACTCCGGCTCGCCTTCGCAGAGCCAAGCAAGGTCCTTGTCCAGC 137217 |||||||| | |||| |||||||||||| || | || |||||||||||| || Sbjct 252 ACGTAGTCATCGAACAGCGGCTCGCCTTCCATGAAGAACGCCAGGTCCTTGTCCGGC 308 >seq1 Length=1655743 Score = 96.9 bits (106), Expect = 5e-15 Identities = 159/224 (71%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 90049 GCCTTCGCGCGCCAGGGTCGACAGGTGGATGATCGGATTGTCCTGGGCCTGCCGGTGGAT 90108 ||| |||||||||| ||| | ||| ||||||| | | || |||||| |||||||| Sbjct 176412 GCCCTCGCGCGCCATGGTGGCGAGGCGGATGATGGCGCTCTCGGCGGCCTGGCGGTGGAT 176471 Query 90109 TTCCGACAGGAAGAAGTCCGGATCATTG-GCCAGCAGGCCCGCGTCGTCCTCGACCGGCG 90167 || | ||| | | |||||| || | | | | |||| | | ||| || || ||||| Sbjct 176472 CTCGGTCAGCATCACGTCCGGCTCGTCGCGGGTGAAGGCGC-CTTCGCCCCGGATCGGCG 176530 Query 90168 GAAGCTGACCAGGATCGCCCATGGCGAAGATCGGCACCCCGTATTCCATGAGGTCGTCGG 90227 | | ||| ||||||||||| | ||| ||||||| ||| | ||| |||||| | Sbjct 176531 GCAACTGGCCAGGATCGCCGAGCACGAGGATCGGCTTGCCGAAGCTCATCAGGTCGCGCG 176590 Query 90228 TCATC-CGGCGCCCGACCATGGACGCCTCGTCGACGACGATCAG 90270 |||| | || |||||||| ||| ||||||||| |||||||| Sbjct 176591 CCATCTCCTCG-CCGACCATCGACACCTCGTCGAGCACGATCAG 176633 >seq89615 Length=3101 Score = 89.7 bits (98), Expect = 7e-13 Identities = 83/103 (81%), Gaps = 2/103 (2%) Strand=Plus/Minus Query 128566 CTTGCCCGGATCGGTGATCGGGTCCTTGTAGATTTCGACCCACTCGCCGTTGATCTCCTG 128625 |||||| | |||||||||||||||||||||| |||| ||||||||||| | | | || Sbjct 190 CTTGCCGGCGTCGGTGATCGGGTCCTTGTAGACATCGATCCACTCGCCGTCCACC-CGTG 132 Query 128626 -GGCCGAGGACTTCATCGCCCACTTGTTGGTGTCGCGGTCCAG 128667 |||||| |||||| ||| |||| | ||| ||||||||||| Sbjct 131 CGGCCGAACACTTCAGCGCGAACTTCTGGGTATCGCGGTCCAG 89 >seq144939 Length=1205 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/80 (85%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 49790 ATCGGGGTGTAGCTCAGTC-GGTAGAGCGCTCGGTTCGGGACCGAGAGGCCGTGGGTTCG 49848 |||||||| |||||||||| ||||||||||| ||||||||| ||||| ||| |||||| Sbjct 15 ATCGGGGTATAGCTCAGTCTGGTAGAGCGCTACGTTCGGGACGTAGAGGTCGTAGGTTCG 74 Query 49849 AGTCCCGCCACCCAGACCAA 49868 | ||| || |||| |||||| Sbjct 75 AATCCTGCTACCCCGACCAA 94 >seq103 Length=407632 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/80 (85%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 49790 ATCGGGGTGTAGCTCAGTC-GGTAGAGCGCTCGGTTCGGGACCGAGAGGCCGTGGGTTCG 49848 |||||||| |||||||||| ||||||||||| ||||||||| ||||| ||| |||||| Sbjct 40753 ATCGGGGTATAGCTCAGTCTGGTAGAGCGCTACGTTCGGGACGTAGAGGTCGTAGGTTCG 40812 Query 49849 AGTCCCGCCACCCAGACCAA 49868 | ||| || |||| |||||| Sbjct 40813 AATCCTGCTACCCCGACCAA 40832 >seq16267 Length=36697 Score = 84.2 bits (92), Expect = 3e-11 Identities = 217/325 (67%), Gaps = 8/325 (2%) Strand=Plus/Plus Query 136729 TTGTAGGCCATCGGGATTTCGTCGATCACGCCAGCGTCCTTGCGGCACTCCACGCCCTCG 136788 || |||||| || ||||| || || || ||| || || ||||| ||||| || || Sbjct 18105 TTATAGGCCGATGGAATTTCATCAATTACAGCAGAATCTTTACGGCATTCCACACCTTCA 18164 Query 136789 GTGGCCTTGATCTGGTCCTCCAGGGTGAAG-GTCGCCTTGGCCTGGGTCCGCGACATCGT 136847 || | ||||| || || | || ||| |||| ||||| | | || |||| Sbjct 18165 GTCTGCGCAATCTGATCTTCAACCGTAAAGCGTCGT-TTGGCTTCCGCACGGCTCATCAC 18223 Query 136848 CCGGCCCGCGCCGTGCGAGCACGAGCAGAACGAGTCCGCATTGCCCTTGCCGCGCACGAT 136907 || || || || || || || ||||| ||||| ||| ||| || ||||| || || Sbjct 18224 TCGACCTGCTCCATGTGAACATGAGCAAAACGATTCCTGATTTCCAAGTCCGCGAACAAT 18283 Query 136908 GTAGGACTTGGCCCCCATCGAGCCGGGGATGATCCCGAACTGGTCC---TTCTGCGCCGA 136964 |||||||||| ||||| ||||| || || || || | || ||| || |||| || Sbjct 18284 AAAGGACTTGGCACCCATTGAGCCTGGAATAATTCCATATTG-TCCAAGTTTGGCGCTGA 18342 Query 136965 CACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTCGAAGTGGAATTCCTTCTGGACGTA 137024 || || || || || || || | || ||| || | || ||| || | || || Sbjct 18343 CA--GCACCTTTACGAGTGACCATCACTTCTTCGCCGTAATGCTCTTCTTTTTCTACATA 18400 Query 137025 GTTGTGGTGGCAGTTCACCGCTTCC 137049 ||| || ||||||||||| |||||| Sbjct 18401 GTTATGATGGCAGTTCACTGCTTCC 18425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 688589140075200