Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_019407.1 Length=218929 Score E Sequences producing significant alignments: (Bits) Value seq12585 425 8e-114 seq52710 138 2e-27 seq1 96.9 5e-15 seq89615 89.7 7e-13 seq16267 89.7 7e-13 seq144939 87.8 3e-12 seq103 87.8 3e-12 >seq12585 Length=48618 Score = 425 bits (470), Expect = 8e-114 Identities = 729/1044 (70%), Gaps = 37/1044 (4%) Strand=Plus/Plus Query 135403 CCTAGCCCTTCACGCAGAGGACTTGCTTGAGGGTGTGGACGATGTCCACGAGGTCCTTCT 135462 |||| || |||||||| | || || ||||| || | | ||||| || || || Sbjct 43192 CCTATCCTTTCACGCATACCACCTGTCGCAGGGTATGCATCACTTCCACCAGCTCGCGCT 43251 Query 135463 GGGCCTCCATGACCGCGTCGATGTCCTTGTAGGCCATCGGGATTTCGTCGATCACGCCAG 135522 |||| ||||| ||| |||||||||||||||||||||||||||||||||||||||| | | Sbjct 43252 GGGCGTCCATTACCTGGTCGATGTCCTTGTAGGCCATCGGGATTTCGTCGATCACGTCGG 43311 Query 135523 CGTCCTTACGGCACTCCACGCCCTCGGTGGCCTTGATCTGGTCCTCCAGGGTGAAGGTCG 135582 ||||||| ||||| || ||| | ||||||||||||||||| |||| ||| || | Sbjct 43312 CGTCCTTTCGGCATTCGACGTGGGCCGTGGCCTTGATCTGGTCGTCCACGGTAAACAGCT 43371 Query 135583 CCTTGGCCTGGGTCCGCGACATCGTCCGGCCCGCGCCGTGCGAGCACGAGCAGAACGAGT 135642 ||| |||| ||| || ||| || ||||| |||||||| ||| |||||||||| | Sbjct 43372 TCTTCGCCTTGGTACGGCTCATGGTTCGGCCGGCGCCGTGGCTGCAGGAGCAGAACGCTT 43431 Query 135643 CCGCATTGCCCTTGCCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATGATCC 135702 || | || ||| |||||| |||||| || |||||||||||| |||||||||||||||| Sbjct 43432 CCTCGTTCCCCAGGCCGCGTACGATGAAGCTCTTGGCCCCCATGGAGCCGGGGATGATCC 43491 Query 135703 CGAACTGGTCCTTCTGCGCCGACACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTCGA 135762 | | || |||||| |||||||||||| || || || || || | ||| || ||| Sbjct 43492 CCAGCTCACCCTTCTTCGCCGACACCGCACCTTTTCGCGTTACCAGCACCTCTTCACCGA 43551 Query 135763 AGTGGAATTCCTTCTGGACGTAGTTGTGGTGGCAGTTCACCGCTTCCTTGTCCGTCTTGA 135822 ||||| |||||||| |||||||||||||| |||||||| |||||| || | || Sbjct 43552 AGTGGCGCTCCTTCTGCACGTAGTTGTGGTGACAGTTCACTGCTTCCAGCGCCACGTCGA 43611 Query 135823 ACGGC-GGCAGGCCCGACGCC-CGCATGGCCTCCAGGACCCGGACCATCATCATCTCGCG 135880 ||||| || | | ||||| || ||| | | || | |||||||| |||| Sbjct 43612 ACGGCTTGCTGATC--ACGCCTCGTGCCGCCGCGATCACTGCGTGCATCATCAGTGCGCG 43669 Query 135881 GTTGATCCGCGCGAAGTCCTGGCCCCAGGCGACGGCTTCCACGTAGTCGTGGAACTCCGG 135940 ||| | ||||||||||| ||||| | ||||||||||||||||||| ||| | | | Sbjct 43670 GTTCTGCTTGGCGAAGTCCTGCGCCCAGCCCACGGCTTCCACGTAGTCGTTGAAGTGCTG 43729 Query 135941 TTCGCCTTCGCAGAGCCAAGCAAGGTCCTTGTCCAGCGGCTTGCGCCCGTCACGCCGCAG 136000 |||||| || | || ||||| || | || | ||| || | | | Sbjct 43730 GCTGCCTTCTTCGAAGTAGGCCAGGTCGCGGTGCGGCAGGTTG---GCGATGTGTTGGTG 43786 Query 136001 CATCATC-TCCTTGGCCTTCTCGATGAAGATACGGCCGATGGTGTTGCCGACGCCGCGCG 136059 ||| ||| ||| |||| |||||||| | ||||||| ||| || |||||||| | Sbjct 43787 CAT-ATCGGCCTGGGCCAGTTCGATGAACAGGTTACCGATGGCGTTACCTACGCCGCGTG 43845 Query 136060 AGCCCGAGTGGAGCATCACCCAGACGCGCTGGTCCTCGTCGAGGCAGACCTCGATGAAGT 136119 | || ||| ||||| | ||| ||||| | | | || || ||||||||||||||||||| Sbjct 43846 ATCCGCTGTGCAGCATGAACCACACGCGGTTGGCTTCATCCAGGCAGACCTCGATGAAGT 43905 Query 136120 GGTTGCCGCCGCCCAGGGTGCCCAGTTGGACCACGCTGTTGGCGTTCTTCAGCGCCGGGT 136179 |||| ||| |||||||| ||||| || | |||||| |||| |||| ||||| Sbjct 43906 GGTTACCGGTTCCCAGGGTTCCCAGGTGTTTGCGGTTGTTGGTCTTCTCCAGCTTCGGGT 43965 Query 136180 ACTTCTCGCAG---AGCTTG------TCGAACCGCGCC-TCCAGGCCCGAGTCGACCCAC 136229 ||| ||| | |||||| ||| | ||||| |||||| | |||| | | Sbjct 43966 GCTTGTCGGTGATCAGCTTGAAGCGCTCGCTCAGCGCCGACCAGGCGTG-GTCGGTCAGC 44024 Query 136230 TTGCGCAGGATCGAGTTGGGGATGCCGCTGCGCCCGT-TC-CAGCCGCC-CG-ACGGACC 136285 | ||| | || || || || | || | | |||| || |||| Sbjct 44025 TCCGGCACGTTC-----------TCCCAGGCACCTTTATCGCGGGCGCCGCGCCCGGA-- 44071 Query 136286 CGGCCCGCCGTGCGGGACGGCGTGCTCGATCAGCGAGCGAAGCTTGGACAGGCTGTCGGG 136345 | | ||||||||| ||||| | |||||| | ||| || || |||| | || || Sbjct 44072 AGTACGGCCGTGCGGCACGGCCTTCTCGATGGCGGCGCGCAGGCCGGCCAGGTTATCCGG 44131 Query 136346 AAGGTCCGACGCGGTCAGGCTGGTGCGGACCGCCATCATGCCGCAGCCGATGTCGACGCC 136405 ||||| || |||| ||||||| | || ||||||||||| ||||| || || || Sbjct 44132 CAGGTCGTGGGCCATCAGCGTGGTGCGCGCGGCGATCATGCCGCAACCGATATCCACACC 44191 Query 136406 GACGGCGGCCGGGATGATCGCGCC 136429 ||||| |||||||| |||||||| Sbjct 44192 AACGGCCGCCGGGATAATCGCGCC 44215 >seq52710 Length=7253 Score = 138 bits (152), Expect = 2e-27 Identities = 210/297 (71%), Gaps = 3/297 (1%) Strand=Plus/Plus Query 135681 CCCATCGAGCCGGGGATGATCCCGAACTGGTCCTTCTGCGCCGACACCGCGCCCTTGCGG 135740 ||||| |||||| ||||| || | | | ||| |||| |||||||||||||||| Sbjct 15 CCCATGCTGCCGGGAATGATGCCAAGTTCGCCCTCGCGCGCACTCACCGCGCCCTTGCGG 74 Query 135741 GTCACGAAGACCCACTCGTCGAAGTGGAATTCCTTCTGGACGTAGTTGTGGTGGCAGTTC 135800 ||||| | | || | || ||| |||||||| ||||||||||||||||||||| Sbjct 75 GTCACCAGCAGTTCCTGGCCGTGGTGCGTCTCCTTCTGTACGTAGTTGTGGTGGCAGTTC 134 Query 135801 ACCGCTTCCTTGTCCGTCTTGAACGGCGGCAGGCCCGACGCCCGCATGGCCTCCAGGACC 135860 ||||| | || || |||| ||||| ||| | | |||| | |||| ||| Sbjct 135 ACCGCCATCGCCGCCAGCTGGAACTTCGGCAA--CCGGTGGC-GCATCTCGGCCAGCACC 191 Query 135861 CGGACCATCATCATCTCGCGGTTGATCCGCGCGAAGTCCTGGCCCCAGGCGACGGCTTCC 135920 || ||||||| ||||||||| ||| ||| ||||||| |||| | || ||||| Sbjct 192 CGCGACATCATCGCCTCGCGGTTCTGCCGGGCGTAGTCCTGTGCCCACGACACCGCTTCG 251 Query 135921 ACGTAGTCGTGGAACTCCGGTTCGCCTTCGCAGAGCCAAGCAAGGTCCTTGTCCAGC 135977 |||||||| | |||| ||| |||||||| || | || |||||||||||| || Sbjct 252 ACGTAGTCATCGAACAGCGGCTCGCCTTCCATGAAGAACGCCAGGTCCTTGTCCGGC 308 >seq1 Length=1655743 Score = 96.9 bits (106), Expect = 5e-15 Identities = 159/224 (71%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 88766 GCCTTCGCGCGCCAGGGTCGACAGGTGGATGATCGGATTGTCCTGGGCCTGCCGGTGGAT 88825 ||| |||||||||| ||| | ||| ||||||| | | || |||||| |||||||| Sbjct 176412 GCCCTCGCGCGCCATGGTGGCGAGGCGGATGATGGCGCTCTCGGCGGCCTGGCGGTGGAT 176471 Query 88826 TTCCGACAGGAAGAAGTCCGGATCATTG-GCCAGCAGGCCCGCGTCGTCCTCGACCGGCG 88884 || | ||| | | |||||| || | | | | |||| | | ||| || || ||||| Sbjct 176472 CTCGGTCAGCATCACGTCCGGCTCGTCGCGGGTGAAGGCGC-CTTCGCCCCGGATCGGCG 176530 Query 88885 GAAGCTGACCAGGATCGCCCATGGCGAAGATCGGCACCCCGTATTCCATGAGGTCGTCGG 88944 | | ||| ||||||||||| | ||| ||||||| ||| | ||| |||||| | Sbjct 176531 GCAACTGGCCAGGATCGCCGAGCACGAGGATCGGCTTGCCGAAGCTCATCAGGTCGCGCG 176590 Query 88945 TCATC-CGGCGCCCGACCATGGACGCCTCGTCGACGACGATCAG 88987 |||| | || |||||||| ||| ||||||||| |||||||| Sbjct 176591 CCATCTCCTCG-CCGACCATCGACACCTCGTCGAGCACGATCAG 176633 >seq89615 Length=3101 Score = 89.7 bits (98), Expect = 7e-13 Identities = 83/103 (81%), Gaps = 2/103 (2%) Strand=Plus/Minus Query 127326 CTTGCCCGGATCGGTGATCGGGTCCTTGTAGATTTCGACCCACTCGCCGTTGATCTCCTG 127385 |||||| | |||||||||||||||||||||| |||| ||||||||||| | | | || Sbjct 190 CTTGCCGGCGTCGGTGATCGGGTCCTTGTAGACATCGATCCACTCGCCGTCCACC-CGTG 132 Query 127386 -GGCCGAGGACTTCATCGCCCACTTGTTGGTGTCGCGGTCCAG 127427 |||||| |||||| ||| |||| | ||| ||||||||||| Sbjct 131 CGGCCGAACACTTCAGCGCGAACTTCTGGGTATCGCGGTCCAG 89 >seq16267 Length=36697 Score = 89.7 bits (98), Expect = 7e-13 Identities = 218/325 (67%), Gaps = 8/325 (2%) Strand=Plus/Plus Query 135489 TTGTAGGCCATCGGGATTTCGTCGATCACGCCAGCGTCCTTACGGCACTCCACGCCCTCG 135548 || |||||| || ||||| || || || ||| || |||||||| ||||| || || Sbjct 18105 TTATAGGCCGATGGAATTTCATCAATTACAGCAGAATCTTTACGGCATTCCACACCTTCA 18164 Query 135549 GTGGCCTTGATCTGGTCCTCCAGGGTGAAG-GTCGCCTTGGCCTGGGTCCGCGACATCGT 135607 || | ||||| || || | || ||| |||| ||||| | | || |||| Sbjct 18165 GTCTGCGCAATCTGATCTTCAACCGTAAAGCGTCGT-TTGGCTTCCGCACGGCTCATCAC 18223 Query 135608 CCGGCCCGCGCCGTGCGAGCACGAGCAGAACGAGTCCGCATTGCCCTTGCCGCGCACGAT 135667 || || || || || || || ||||| ||||| ||| ||| || ||||| || || Sbjct 18224 TCGACCTGCTCCATGTGAACATGAGCAAAACGATTCCTGATTTCCAAGTCCGCGAACAAT 18283 Query 135668 GTAGGACTTGGCCCCCATCGAGCCGGGGATGATCCCGAACTGGTCC---TTCTGCGCCGA 135724 |||||||||| ||||| ||||| || || || || | || ||| || |||| || Sbjct 18284 AAAGGACTTGGCACCCATTGAGCCTGGAATAATTCCATATTG-TCCAAGTTTGGCGCTGA 18342 Query 135725 CACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTCGAAGTGGAATTCCTTCTGGACGTA 135784 || || || || || || || | || ||| || | || ||| || | || || Sbjct 18343 CA--GCACCTTTACGAGTGACCATCACTTCTTCGCCGTAATGCTCTTCTTTTTCTACATA 18400 Query 135785 GTTGTGGTGGCAGTTCACCGCTTCC 135809 ||| || ||||||||||| |||||| Sbjct 18401 GTTATGATGGCAGTTCACTGCTTCC 18425 >seq144939 Length=1205 Score = 87.8 bits (96), Expect = 3e-12 Identities = 68/80 (85%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 48502 ATCGGGGTGTAGCTCAGTC-GGTAGAGCGCTCGGTTCGGGACCGAGAGGCCGTGGGTTCG 48560 |||||||| |||||||||| ||||||||||| ||||||||| ||||| ||| |||||| Sbjct 15 ATCGGGGTATAGCTCAGTCTGGTAGAGCGCTACGTTCGGGACGTAGAGGTCGTAGGTTCG 74 Query 48561 AGTCCCGCCACCCAGACCAA 48580 | ||| || |||| |||||| Sbjct 75 AATCCTGCTACCCCGACCAA 94 >seq103 Length=407632 Score = 87.8 bits (96), Expect = 3e-12 Identities = 68/80 (85%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 48502 ATCGGGGTGTAGCTCAGTC-GGTAGAGCGCTCGGTTCGGGACCGAGAGGCCGTGGGTTCG 48560 |||||||| |||||||||| ||||||||||| ||||||||| ||||| ||| |||||| Sbjct 40753 ATCGGGGTATAGCTCAGTCTGGTAGAGCGCTACGTTCGGGACGTAGAGGTCGTAGGTTCG 40812 Query 48561 AGTCCCGCCACCCAGACCAA 48580 | ||| || |||| |||||| Sbjct 40813 AATCCTGCTACCCCGACCAA 40832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 698866732887840