Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_019408.1 Length=223720 Score E Sequences producing significant alignments: (Bits) Value seq12585 370 2e-97 seq52710 149 9e-31 seq1 107 3e-18 seq144939 87.8 3e-12 seq103 87.8 3e-12 >seq12585 Length=48618 Score = 370 bits (410), Expect = 2e-97 Identities = 694/1003 (69%), Gaps = 39/1003 (4%) Strand=Plus/Plus Query 139506 CGGCACTCGACGCCTTCGGTCGCCTTGATCTGGTCTTCCAGCGTGAAGGCGGC--CTTGG 139563 ||||| |||||| | || |||||||||||||| |||| || || | || ||| | Sbjct 43320 CGGCATTCGACGTGGGCCGTGGCCTTGATCTGGTCGTCCACGGTAAA--CAGCTTCTTCG 43377 Query 139564 CGGCGGTGCGCGACATGGTCCGCCCCGCGCCGTGCGAGCACGAGCAGAACGAGTCGGCGT 139623 | ||| || |||||| || || |||||||| ||| |||||||||| || ||| Sbjct 43378 CCTTGGTACGGCTCATGGTTCGGCCGGCGCCGTGGCTGCAGGAGCAGAACGCTTCCTCGT 43437 Query 139624 TGCCCTTGCCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATGATGCCGAACT 139683 | ||| |||||| |||||| || |||||||||||| |||||||||||||| || | || Sbjct 43438 TCCCCAGGCCGCGTACGATGAAGCTCTTGGCCCCCATGGAGCCGGGGATGATCCCCAGCT 43497 Query 139684 GGTCCTTCTGAGCCGACACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTCGAAGTGGA 139743 |||||| ||||||||||| || || || || || | ||| || |||||||| Sbjct 43498 CACCCTTCTTCGCCGACACCGCACCTTTTCGCGTTACCAGCACCTCTTCACCGAAGTGGC 43557 Query 139744 ACTCCTTCTGGACGTAGTTGTGGTGGCAGTTCACCGCTTCCTTGTCCGTCTTGAAGGGC- 139802 ||||||||| |||||||||||||| |||||||| |||||| || | ||| ||| Sbjct 43558 GCTCCTTCTGCACGTAGTTGTGGTGACAGTTCACTGCTTCCAGCGCCACGTCGAACGGCT 43617 Query 139803 GGCAG-GCCCGAGGCGCGCATGGCGTCCAGGACCCGGATCATCATCATCTCGCGGTTGAT 139861 || | | || || || || | | || | |||||||| ||||||| Sbjct 43618 TGCTGATCACGCCTCGTGC--CGCCGCGATCACTGCGTGCATCATCAGTGCGCGGTTCTG 43675 Query 139862 CCGCGCGAAGTCCTGACCCCAGGCGACGGCTTCCACGTAGTCGTAGAA-TTCCGGCTCGC 139920 | ||||||||||| ||||| | ||||||||||||||||||| ||| | | |||| || Sbjct 43676 CTTGGCGAAGTCCTGCGCCCAGCCCACGGCTTCCACGTAGTCGTTGAAGTGCTGGCT-GC 43734 Query 139921 CTTC--CGACAGCCACGCGAGGTCCTTGTCGAGCGGCTTCTGACCGTCCCGACGCAGCAT 139978 |||| ||| || | || ||||| | | ||||| | || | | |||| Sbjct 43735 CTTCTTCGA-AG-TAGGCCAGGTC---GCGGTGCGGCAGGTTGGCGATGTGTTGGTGCAT 43789 Query 139979 CATC-TCCTTGGCCTTCTCGATGAAGATACGGCCGATGGTGTTGCCGACGCCGCGCGAGC 140037 ||| ||| |||| |||||||| | ||||||| ||| || |||||||| || | Sbjct 43790 -ATCGGCCTGGGCCAGTTCGATGAACAGGTTACCGATGGCGTTACCTACGCCGCGTGATC 43848 Query 140038 CCGAGTGGAGCATCACCCAGACGCGCTGGTCCTCGTCGAGGCAGACCTCGATGAAGTGGT 140097 | ||| ||||| | ||| ||||| | | | || || |||||||||||||||||||||| Sbjct 43849 CGCTGTGCAGCATGAACCACACGCGGTTGGCTTCATCCAGGCAGACCTCGATGAAGTGGT 43908 Query 140098 TGCCGCCGCCCAGCGTGCCCAGTTGGACGACGCTGTTGGCGTTCTTGAGGGTCTTGTACT 140157 | ||| ||||| || ||||| || | | |||||| |||| || || || || Sbjct 43909 TACCGGTTCCCAGGGTTCCCAGGTGTTTGCGGTTGTTGGTCTTCTCCAGCTTCGGGTGCT 43968 Query 140158 TGTCGCAGAGCTTCTCGAACCGGGCTTCCAGGCCCGAGTCGACCCACTTGCGCATGATCG 140217 ||||| || | || ||| || | ||| |||| ||| || || ||| Sbjct 43969 TGTCGGTGATCAGCTTGAAGCGCTCGCTCAGCGCCGA------CCA----GGCGTGGTCG 44018 Query 140218 ---AGTTCGGG---ATGCCGCTACGCCCGTTCCAGCCGCCCGACGGACCCGG----CCCG 140267 || || || | | | | || | || || || || ||||| | | Sbjct 44019 GTCAGCTCCGGCACGTTCTCCCAGGCACCTTTATCGCGGGCGCCGCGCCCGGAAGTACGG 44078 Query 140268 CCGTGCGGGACGGCGTGCTCGATCAGCGAGCGCAGCTTGGCGAGGCTGTCGGGCAGGTCC 140327 |||||||| ||||| | |||||| | |||||| ||| ||| | || |||||||| Sbjct 44079 CCGTGCGGCACGGCCTTCTCGATGGCGGCGCGCAGGCCGGCCAGGTTATCCGGCAGGTCG 44138 Query 140328 GAGGCCTTCAGCGAGGTGCGCACGGCCATCATGCCGCAGCCGATGTCCACGCCCACGGCC 140387 |||| |||||| ||||||| |||| ||||||||||| ||||| ||||| || |||||| Sbjct 44139 TGGGCCATCAGCGTGGTGCGCGCGGCGATCATGCCGCAACCGATATCCACACCAACGGCC 44198 Query 140388 GCCGGGATGATGGCGCCCTTGGTCGGGATCACCGAGCCCACGGTCGAGCCGATGCCCATG 140447 |||||||| || ||||| || |||||||| ||| | ||||||||| | |||| | Sbjct 44199 GCCGGGATAATCGCGCCGACCGTGGGGATCACGCTGCCGATGGTCGAGCCCTTACCCAGG 44258 Query 140448 TGGACGTCCGGCATCAGGGCCACATGCGAGTGGATGAACGGCA 140490 || ||||||||||||| |||| ||| | ||||||||||| Sbjct 44259 TGCACGTCCGGCATCACCGCCAGGTGCTTGAAGATGAACGGCA 44301 >seq52710 Length=7253 Score = 149 bits (164), Expect = 9e-31 Identities = 210/293 (72%), Gaps = 3/293 (1%) Strand=Plus/Plus Query 139656 CCCATCGAGCCGGGGATGATGCCGAACTGGTCCTTCTGAGCCGACACCGCGCCCTTGCGG 139715 ||||| |||||| |||||||| | | | ||| | || |||||||||||||||| Sbjct 15 CCCATGCTGCCGGGAATGATGCCAAGTTCGCCCTCGCGCGCACTCACCGCGCCCTTGCGG 74 Query 139716 GTCACGAAGACCCACTCGTCGAAGTGGAACTCCTTCTGGACGTAGTTGTGGTGGCAGTTC 139775 ||||| | | || | || ||| ||||||||| ||||||||||||||||||||| Sbjct 75 GTCACCAGCAGTTCCTGGCCGTGGTGCGTCTCCTTCTGTACGTAGTTGTGGTGGCAGTTC 134 Query 139776 ACCGCTTCCTTGTCCGTCTTGAAGGGCGGCAGGCCCGAGGCGCGCATGGCGTCCAGGACC 139835 ||||| | || || ||| ||||| ||| | |||||| || |||| ||| Sbjct 135 ACCGCCATCGCCGCCAGCTGGAACTTCGGCAA--CCGGTG-GCGCATCTCGGCCAGCACC 191 Query 139836 CGGATCATCATCATCTCGCGGTTGATCCGCGCGAAGTCCTGACCCCAGGCGACGGCTTCC 139895 || ||||||| ||||||||| ||| ||| ||||||| |||| | || ||||| Sbjct 192 CGCGACATCATCGCCTCGCGGTTCTGCCGGGCGTAGTCCTGTGCCCACGACACCGCTTCG 251 Query 139896 ACGTAGTCGTAGAATTCCGGCTCGCCTTCCGACAGCCACGCGAGGTCCTTGTC 139948 |||||||| | ||| ||||||||||||| | |||| ||||||||||| Sbjct 252 ACGTAGTCATCGAACAGCGGCTCGCCTTCCATGAAGAACGCCAGGTCCTTGTC 304 >seq1 Length=1655743 Score = 107 bits (118), Expect = 3e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 90190 CCTTCGCGCGCCAGGGTCGACAGGTGGATGATCGGGTTGTCCTTGGCCTGACGGTGGATT 90249 || |||||||||| ||| | ||| ||||||| | | | || |||||| |||||||| Sbjct 176413 CCCTCGCGCGCCATGGTGGCGAGGCGGATGATGGCGCTCTCGGCGGCCTGGCGGTGGATC 176472 Query 90250 TCCGACAGGAAGAAGTCCGGGTCGTT-CGCCAGCAGGCCGGCGGCGTCCTCGACCGGCGG 90308 || | ||| | | |||||| |||| || | |||| | | || || || |||||| Sbjct 176473 TCGGTCAGCATCACGTCCGGCTCGTCGCGGGTGAAGGC-GCCTTCGCCCCGGATCGGCGG 176531 Query 90309 AAGCTGACCAGGATCGCCCATGGCGAAGATCGGCACGCCGAATTCCATCAGGTCGTCGGT 90368 | ||| ||||||||||| | ||| ||||||| |||||| |||||||||| | Sbjct 176532 CAACTGGCCAGGATCGCCGAGCACGAGGATCGGCTTGCCGAAGCTCATCAGGTCGCGCGC 176591 Query 90369 CATGCGCCGGCCGACCATGGAGGCTTCATCGACCACGATCAGGCTGGC 90416 ||| | ||||||||| || | || |||| ||||||||| | ||| Sbjct 176592 CATCTCCTCGCCGACCATCGACACCTCGTCGAGCACGATCAGCCGGGC 176639 >seq144939 Length=1205 Score = 87.8 bits (96), Expect = 3e-12 Identities = 68/80 (85%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 49995 ATCGGGGTGTAGCTCAGTC-GGTAGAGCGCTCGGTTCGGGACCGAGAGGCCGTGGGTTCG 50053 |||||||| |||||||||| ||||||||||| ||||||||| ||||| ||| |||||| Sbjct 15 ATCGGGGTATAGCTCAGTCTGGTAGAGCGCTACGTTCGGGACGTAGAGGTCGTAGGTTCG 74 Query 50054 AGTCCCGCCACCCAGACCAA 50073 | ||| || |||| |||||| Sbjct 75 AATCCTGCTACCCCGACCAA 94 >seq103 Length=407632 Score = 87.8 bits (96), Expect = 3e-12 Identities = 68/80 (85%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 49995 ATCGGGGTGTAGCTCAGTC-GGTAGAGCGCTCGGTTCGGGACCGAGAGGCCGTGGGTTCG 50053 |||||||| |||||||||| ||||||||||| ||||||||| ||||| ||| |||||| Sbjct 40753 ATCGGGGTATAGCTCAGTCTGGTAGAGCGCTACGTTCGGGACGTAGAGGTCGTAGGTTCG 40812 Query 50054 AGTCCCGCCACCCAGACCAA 50073 | ||| || |||| |||||| Sbjct 40813 AATCCTGCTACCCCGACCAA 40832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 714163392460800