Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_019445.1 Length=44784 Score E Sequences producing significant alignments: (Bits) Value seq549 109 2e-19 seq5373 87.8 5e-13 seq29819 84.2 6e-12 >seq549 Length=260093 Score = 109 bits (120), Expect = 2e-19 Identities = 129/172 (75%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 1193 ACATGATATGCGCCGTACAGCCAGTACGTTGTTGCATGAGGCTGGTTATCCTTCAGACTG 1252 |||||| |||| || || |||||||||||| ||||||| || || || | ||||| Sbjct 4937 ACATGACTTGCGGCGCACGGCCAGTACGTTGCTGCATGAAGCCGGCTACAACACGGACTG 4878 Query 1253 GATTGAAAAGGCTCTGGCACATGAGCAGAAAGGTGTGCGCGCCGTATATAACAAAGCGGA 1312 ||| |||||| |||||||| ||||||| ||| || | ||||| || ||||| || || Sbjct 4877 GATCGAAAAGTGCCTGGCACACGAGCAGAGAGGCGTCAGGGCCGTCTACAACAAGGCCGA 4818 Query 1313 ATA-CGCCAGACAGCGCGCCTACATGTTGCAGCAGTGGGCCGATATGATTGA 1363 || ||| || |||||| | ||||||||| | ||||| || ||||| || Sbjct 4817 GTACCGCGAG-CAGCGCACGGCGATGTTGCAGGACTGGGCGGACATGATCGA 4767 >seq5373 Length=95907 Score = 87.8 bits (96), Expect = 5e-13 Identities = 66/75 (88%), Gaps = 2/75 (3%) Strand=Plus/Plus Query 14432 CAGGATTCGAACCTGCGACCAACCGCTTAGAAGGCGGTTGCTCTGTCCAACTGAGCTA-A 14490 ||||||||||||||| ||||| ||||||||||||||| |||||| ||||||||||||| | Sbjct 62094 CAGGATTCGAACCTGTGACCATCCGCTTAGAAGGCGGATGCTCTATCCAACTGAGCTACA 62153 Query 14491 TGC-CACAACGCTGA 14504 || || |||| ||| Sbjct 62154 GGCGCATAACGATGA 62168 >seq29819 Length=16985 Score = 84.2 bits (92), Expect = 6e-12 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 14431 GCAGGATTCGAACCTGCGACCAACCGCTTAGAAGGCGGTTGCTCTGTCCAACTGAGCTA 14489 |||||| ||||||||||||||| ||||||||||||||| |||||| |||| |||||||| Sbjct 14132 GCAGGACTCGAACCTGCGACCATCCGCTTAGAAGGCGGATGCTCTATCCAGCTGAGCTA 14074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 142880736077872