Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_019448.1 Length=139806 Score E Sequences producing significant alignments: (Bits) Value seq57423 96.9 3e-15 seq5373 93.3 4e-14 >seq57423 Length=6334 Score = 96.9 bits (106), Expect = 3e-15 Identities = 215/315 (68%), Gaps = 11/315 (3%) Strand=Plus/Minus Query 135247 CCTGATAGTGGAGACCCTGTTAAGATTATTTGTGGTGACCCTGATGCAGATACTGAGTAT 135306 ||||| ||| || || || || ||||| |||||||| ||||||||||| || || Sbjct 5788 CCTGACTCTGGTGATCCAGTGAAAATTATCTGTGGTGATCCTGATGCAGAGCTAGA-TAG 5730 Query 135307 GAACG----TAAAGGTGCTGTAGAAGTACTTTGGGATACTTTTGGAGGTACTGAAACTGA 135362 || ||||||||| || || | ||||| | |||||| || || ||||| Sbjct 5729 CCCCGCTTATAAAGGTGCAGTGCAATGTTTATGGGAAATTTTTGGCGGCACGGAAACAAC 5670 Query 135363 AAAAGGATATAAAGTACTAGATGAACATGTAGGATTAATCTATGGTGATTCTATTA-ACT 135421 |||| ||||||||||| | || | ||| || |||||||||||||| || |||| || Sbjct 5669 TCAAGGCTATAAAGTACTCAACGAGCGTGTTGGTTTAATCTATGGTGACTCGATTACTCT 5610 Query 135422 ATGAGCGTGCTCAGCAAATTTGTGAGGGATTAAAAGCAAAAGGTTTTGCAAGTATTAACG 135481 | || ||||| || | || | | || || |||| ||||| ||||| | ||| Sbjct 5609 A-GAACGTGCGCAAAATATCTTAAAAGGCTTGGAAGCCAAAGGCTTTGCTTCGAATAATC 5551 Query 135482 TTGTATTAGGTGTAGGTAG-TTTCTCT-TATCAATTTAATACTCGTGATACTCATGGGTT 135539 | || || ||| | ||||| | | || | | ||||| |||||||| || ||| || Sbjct 5550 TAGTCTTTGGTATCGGTAGCTATACCTACAACTATTTA--ACTCGTGACACCTTTGGTTT 5493 Query 135540 TGCAATCAAAGCAAC 135554 ||| | ||||| || Sbjct 5492 TGCCGTAAAAGCCAC 5478 >seq5373 Length=95907 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/227 (70%), Gaps = 3/227 (1%) Strand=Plus/Plus Query 135247 CCTGATAGTGGAGACCCTGTTAAGATTATTTGTGGTGACCCTGATGCAGA--TACTGAGT 135304 ||||| ||| || ||||| || ||||| ||||| || ||||| ||||| || ||| Sbjct 19995 CCTGACTCTGGTGATCCTGTGAAAATTATCTGTGGCGATCCTGAAGCAGAGCTAGATAGT 20054 Query 135305 AT-GAACGTAAAGGTGCTGTAGAAGTACTTTGGGATACTTTTGGAGGTACTGAAACTGAA 135363 | ||||||||| || || | ||||| | |||||| || || ||||| | Sbjct 20055 CCCGCTTATAAAGGTGCAGTGCAATGTTTATGGGAAATTTTTGGCGGCACAGAAACAGCT 20114 Query 135364 AAAGGATATAAAGTACTAGATGAACATGTAGGATTAATCTATGGTGATTCTATTAACTAT 135423 |||| ||||||||||| |||| | ||| || || ||||||||||| || |||| | Sbjct 20115 CAAGGCTATAAAGTACTGAATGAGCGTGTCGGTTTGATCTATGGTGACTCGATTACCCTA 20174 Query 135424 GAGCGTGCTCAGCAAATTTGTGAGGGATTAAAAGCAAAAGGTTTTGC 135470 || ||||| || | || | | || || |||| ||||| ||||| Sbjct 20175 GAACGTGCACAAAATATCTTAAAAGGTTTGGAAGCCAAAGGCTTTGC 20221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 446243565408960