Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_019488.1 Length=34117 Score E Sequences producing significant alignments: (Bits) Value seq5373 104 5e-18 >seq5373 Length=95907 Score = 104 bits (114), Expect = 5e-18 Identities = 239/357 (67%), Gaps = 5/357 (1%) Strand=Plus/Minus Query 13696 GAGGGCGTGGAAAAATAGGTTTGTCGCCATTTTTTGTGAATGGCCATACCGGAAGCCACT 13755 |||||||| ||||| || |||| |||||||| | ||| |||||||||| || || ||| Sbjct 58291 GAGGGCGTTGAAAAGTAAGTTTTACGCCATTTATCGTGCGTGGCCATACCCGACGCAACT 58232 Query 13756 TTGCGCAGTTCCTGGAATTTTGGTATCCAGAAATATTCATCCAGGTACAGATTACCGTGA 13815 || ||||| | || | |||| || |||||| | || | ||| || || Sbjct 58231 TTCTCAAGTTCATCAAAACCATATGTCCAAAAGATTTCATCAAAATATAAATTTCCATGT 58172 Query 13816 TAGCTCTGCGCCGTGCGGGCGTTGGTGCCGA-GAAAGTACAAAGCGGCCCCATTGGGTAA 13874 || ||| ||||| | ||| || || | ||| || | | || ||||| | ||| Sbjct 58171 GGGCCCTGAGCCGTTCTATAGTTAGTTCCTAAGAATCTA-AGCTCTGCACCATTAGATAA 58113 Query 13875 CACCATGGGATCGCCTTTCAGCTCAACATCC---ACCTCTTTTGCAAAGTCGATGATGTA 13931 | || ||||| || || |||||| | || ||| |||||| | | ||||| Sbjct 58112 AATGATCGGATCACCAGAGAGTTCAACACCGCAAACATCTGCTGCAAAAGCTTTAATGTA 58053 Query 13932 CTGCTTAAAGACGTGCGCCTGTGCCTTACTGGCAGAAAGGAAAATCTGGTTGCGTCCGGT 13991 ||||| || | || |||||||| || |||||| || |||||||| || || || || Sbjct 58052 ATGCTTGAAAATATGTGCCTGTGCTTTTGAGGCAGATAGAAAAATCTGATTTCGGCCTGT 57993 Query 13992 CAGCAGGGCGTCAATCAATGCTTCACGGGCAAAATAAAACGTGGCGCCAATCTGGCG 14048 | || || | | |||||| | ||||||||||| || || ||||| ||||| Sbjct 57992 TCTTACTGCATCGACTAGGGCTTCATGAGCAAAATAAAAGGTCGCACCAATTTGGCG 57936 Score = 100 bits (110), Expect = 6e-17 Identities = 130/177 (73%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 16170 TGGTGATGGATGCCGTCAACGAGCTGATCGACGCGGTTTATCAGGATGATGACGATCTGG 16229 |||| |||||| ||| || |||| || | ||| | ||||| || ||| ||| Sbjct 55769 TGGTAATGGATTTAACCAATGAAATGATTGATGAGGTACACCAGGACAATCCTGATTTGG 55710 Query 16230 TTGTTGTCTGCGGACGT-GAACTGCTGTCTGACAAGTATTTCCCGCTGGTCAACAAAGAG 16288 |||| | || ||| | |||| | |||||||| |||||||| ||||| ||||||||| Sbjct 55709 TTGTACTATGTAATCGTCGTACTGTT-TCTGACAAATATTTCCCACTGGTAAACAAAGAG 55651 Query 16289 CAGGACAACAGCGAGAAAATTGCCGCCGATCTGATCATCAGCCAGAAACGTATGGGC 16345 || || |||||||| ||| || | || ||| | || |||||||| ||||| |||||| Sbjct 55650 CAAGAGAACAGCGAAAAACTTTCTGCAGATATTATTATCAGCCAAAAACGCATGGGC 55594 Score = 98.7 bits (108), Expect = 2e-16 Identities = 198/291 (68%), Gaps = 6/291 (2%) Strand=Plus/Minus Query 27728 CGTGCCAAAATCGACGAGCAGATCGGCTGGCATAAAACCCTGTCCAATGTGGGTGTGAAC 27787 || || ||||| ||| | | | || |||||||||||||| || || || || || Sbjct 45065 CGCGCAAAAATTGACAATGACACAGGATGGCATAAAACCCTTTCAAACGTACCAGTAAAT 45006 Query 27788 GGTGTCACCGGCATTTCCGCTGATGTGTTCTGGGATCTGCAGGACCCGGCAACCGATGCG 27847 || || || || ||||| || || || ||| | |||||| || |||||||| Sbjct 45005 GGCGTGACAGGGATTTCTAAAGACGTTTTTTGGCAACTGCAGTCAATGGATACCGATGCT 44946 Query 27848 GGACTGCTGAACAAAAATGACGTCACCACATTGATCCGCAAAGACGGCTTCCGCTTCTGG 27907 || || || |||||| |||| || || |||| || |||||||| || ||| Sbjct 44945 GGTTATCTCAATTCAAATGAAATCACGACTTTAATCCAGCGTGATGGCTTCCGTTTTTGG 44886 Query 27908 GGTTCCCG---TTGTCTCAGTGACGATCCGCTGTTTGCTTTTGAGAACTACACCCGTACG 27964 ||||| || |||| || || ||||| | ||||| ||||| |||| || ||||| Sbjct 44885 GGTTCACGTACTTGT-TC--TGCTGATCCTTTATTTGCATTTGAAAACTCAACTCGTACA 44829 Query 27965 GCGCAGGTGCTGGCTGACACTATGGCGGAGGCGCACATGTGGGCGGTGGAT 28015 || || || || | ||||| ||||| || | || |||||||| || ||| Sbjct 44828 GCTCAAGTTTTGTCGGACACGATGGCTGAAGGTCATATGTGGGCAGTTGAT 44778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 108819394019528