Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq188 86.0 6e-12 seq30937 82.4 8e-11 >seq188 Length=347077 Score = 86.0 bits (94), Expect = 6e-12 Identities = 75/91 (82%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 26912 GCGCAAGTGGCGGAATTGGTAGACGCCCAGGTTTTAGGTACCTGTGCCCTAGTGGCGTGA 26971 |||| ||||| | ||||||||||| | | || ||||||| || ||||| | ||||||| Sbjct 288305 GCGCCAGTGGTGAAATTGGTAGACACGCCGGATTTAGGTTCCGGTGCCGCAA-GGCGTGA 288247 Query 26972 AGGTTCAAGTCCTTTCTTGCGCATCAGTCTT 27002 ||||||||||||||||| ||||| || |||| Sbjct 288246 AGGTTCAAGTCCTTTCTGGCGCACCA-TCTT 288217 >seq30937 Length=15981 Score = 82.4 bits (90), Expect = 8e-11 Identities = 56/62 (90%), Gaps = 1/62 (2%) Strand=Plus/Plus Query 28885 ATTAGCTCAGC-GGTAGAGCATCTCGTTTACACCGAGGCGGTCGGCGGTTCAATCCCGTC 28943 ||||||||||| |||||||||||||||||||||||||| ||||||| |||||| | ||| Sbjct 1278 ATTAGCTCAGCTGGTAGAGCATCTCGTTTACACCGAGGAGGTCGGCAGTTCAAGTCTGTC 1337 Query 28944 AT 28945 || Sbjct 1338 AT 1339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515316396384000