Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_019526.1 Length=345809 Score E Sequences producing significant alignments: (Bits) Value seq80752 107 4e-18 seq23 105 1e-17 seq42394 96.9 8e-15 seq5 95.1 3e-14 >seq80752 Length=4292 Score = 107 bits (118), Expect = 4e-18 Identities = 198/283 (70%), Gaps = 8/283 (3%) Strand=Plus/Plus Query 48459 GTATTATCTCTTAACGTTTCTGCTGTAACTGCTGGTACAAAATACCGTGGTGAATTCGAA 48518 |||||||| ||| | | |||| | ||| ||| | ||||||||||||||||| ||| Sbjct 3309 GTATTATCGCTTGATTTAGGTGCTTTGGTTGCGGGTGCTAAATACCGTGGTGAATTTGAA 3368 Query 48519 GAACGTATGGAAGGTATTATTAAA-GAACTTAAAAAACGAGAAA---ATGTAATTTTGTT 48574 || ||| | || | |||| || |||||| ||| |||| | || || | || Sbjct 3369 GAGCGTTTAAAATC-AGTATTGAATGAACTTGCCAAAGAAGAAGGCCAAGTCATCCTCTT 3427 Query 48575 CATTGATGAAGTACATATTATGATGGGTGCTGGTGGTAGCAGCACTGGATCTATGGATAT 48634 ||||||||| | |||| |||| | || || ||| | ||| || ||| | |||||| Sbjct 3428 TATTGATGAAATTCATACTATGGTAGGCGCAGGTAAAA-CAG-AC-GGAGCAATGGATGC 3484 Query 48635 GAGCAATATCATGAAACCTGCACTTTCACGTGGTGATATTCGTGTTATCGGTGCAACAAC 48694 | | ||||| | || ||||||||| | |||||||| | | | | ||||| ||||| Sbjct 3485 GGGTAATATGTTAAAGCCTGCACTTGCCCGTGGTGAGTTACATTGCGTGGGTGCCACAAC 3544 Query 48695 TTATGAGGAATATCGCCAGAACATTGAAAAAGATGCTGCATTT 48737 ||| || ||||| || |||||||||||||||| ||| || Sbjct 3545 CCTTGATGAGTATCGTCAATACATTGAAAAAGATGCGGCACTT 3587 >seq23 Length=559261 Score = 105 bits (116), Expect = 1e-17 Identities = 239/352 (68%), Gaps = 12/352 (3%) Strand=Plus/Plus Query 48488 TGCTGGTACAAAATACCGTGGTGAATTCGAAGAACGTATGGAAGGTATTATTAAAGAACT 48547 ||| ||| ||||||| || ||||| || || || || | ||| || | ||||| || Sbjct 125380 TGCGGGTGCAAAATATCGAGGTGAGTTTGAGGAGCGCTTAAAAGCCGTTCTAAAAGACCT 125439 Query 48548 TAAAAA--ACGAGA---AAATGTAATTTTGTTCATTGATGAAGTACATATTATGATGGGT 48602 | || ||||| |||| ||| | ||||| ||||| | |||| | | ||| Sbjct 125440 TGCGAAGCACGAGGGTGAAATC--ATTCTCTTCATCGATGAGTTGCATACACTTGTTGGT 125497 Query 48603 GCTGGTGGTAGCAGCACTGGATCTATGGATATGAGCAATATCATGAAACCTGCACTTTCA 48662 || ||| || || ||| | |||||| | ||||| | |||||||| | | Sbjct 125498 GCAGGTA--AGG-GCGATGGTGCGATGGATGCAGGTAATATGTTAAAACCTGCTTTGGCT 125554 Query 48663 CGTGGTGATATTCGTGTTATCGGTGCAACAACTTATGAGGAATATCGCCAGAACATTGAA 48722 |||||||| | ||| | | |||||||| |||| || |||||||| || |||||||| Sbjct 125555 CGTGGTGAGTTGCGTTGTGTTGGTGCAACGACTTTAGATGAATATCGTCAATACATTGAA 125614 Query 48723 AAAGATGCTGCATTTTCCCGCCGCTTCACTAAAATTGAT-GTAGTTGAACCTAGTATTAA 48781 |||||||||||| || ||||||||| | |||| | | |||| |||||| ||| | | Sbjct 125615 AAAGATGCTGCACTTGAGCGCCGCTTC-CAAAAAGTCTTGGTAGATGAACCGAGTGTGGA 125673 Query 48782 CGAAACACGTGAAATTATTAATGGTCTGAAAGGTACTTATGAAAAATATCAC 48833 || || || |||| | |||||| |||| | |||| || | ||||| Sbjct 125674 AGATACGATTGCAATTTTACGTGGTCTTAAAGAGAAATATGCAACACATCAC 125725 >seq42394 Length=10002 Score = 96.9 bits (106), Expect = 8e-15 Identities = 172/249 (69%), Gaps = 3/249 (1%) Strand=Plus/Minus Query 48488 TGCTGGTACAAAATACCGTGGTGAATTCGAAGAACGTATGGAAGGTATTATTAAAGAACT 48547 ||| |||||||||||||| ||| | || ||||| || ||| ||| | || || ||| | Sbjct 9567 TGCAGGTACAAAATACCGCGGTCAGTTTGAAGAGCGGATGAAAGCGGTGATGAACGAATT 9508 Query 48548 TAAAAAACGAGAAAATGTAATTTTGTTCATTGATGAAGTACATATTATGATGGGTGCTGG 48607 ||||| | | |||| || |||||||||||||| | || | || | |||||||| Sbjct 9507 GGAAAAATCACCAGATGTTATATTGTTCATTGATGAGATCCACACCATTGTTGGTGCTGG 9448 Query 48608 TGGTAGCAGCACTGGATCTATGGATATGAGCAATATCATGAAACCTGCACTTTCACGTGG 48667 ||| ||| || || || ||||| || || | ||||| ||| | | ||||| Sbjct 9447 AGGT-GCATCA--GGTTCATTGGATGCATCGAACATGTTCAAACCGGCATTGGCTCGTGG 9391 Query 48668 TGATATTCGTGTTATCGGTGCAACAACTTATGAGGAATATCGCCAGAACATTGAAAAAGA 48727 || || | |||||| ||||| || | || ||||| || ||| | || || ||||| Sbjct 9390 AGAGATCCAATGTATCGGGGCAACTACCTTGGATGAATACCGTCAGTATATAGAGAAAGA 9331 Query 48728 TGCTGCATT 48736 || ||||| Sbjct 9330 TGGCGCATT 9322 >seq5 Length=869209 Score = 95.1 bits (104), Expect = 3e-14 Identities = 263/398 (66%), Gaps = 4/398 (1%) Strand=Plus/Plus Query 128618 GCAGGGCTTGGTGTTAATATGGGACGTATTCGTGCAATTGATTCTGCAATTCGTGATGGC 128677 ||||| ||||| |||| || |||||||| || | | | |||| ||| ||||| Sbjct 710897 GCAGGTATTGGTATTAACGCAGGCCGTATTCGCGCTTTAGGTAGCCCAATCCGTAATGGC 710956 Query 128678 GATGCAGTACATACTGG-TGTAGTACCATTCTTATCTGCATTAGCAAAAA-CTGTCAAAA 128735 || || | |||||||| |||| | || || |||| ||||| || | | || |||| Sbjct 710957 GAAGCCTTTCATACTGGCTGTA-TCCCGTT-TTATAAGCATTTCCAGACCGCAGTAAAAA 711014 Query 128736 GCTGTTCCCAGGGAGGTGTAAGAGGCGGGGCAGCAACCGTACATTTTCCAATGTGGCATT 128795 |||| || || || ||||| | || || || || ||| | | || |||||||| Sbjct 711015 GCTGCTCGCAAGGCGGTGTGCGTGGTGGTGCCGCCACCCTGTTCTACCCCTTGTGGCATC 711074 Query 128796 TGGAATTTGAAAATATTGTAGTACTGAAAAATAATAAAGGAACTGAATTTAACCGAGTAA 128855 ||||| | ||| | | |||||||||||||| || ||| ||||| |||| Sbjct 711075 TGGAAGTGGAATCGCTGCTGGTACTGAAAAATAACCGCGGTGTAGAAGAGAACCGGGTAA 711134 Query 128856 GACAACTGGACTATTGCTTCCAAATCAATAAGACATTATATCAACGATTGATTGATGGAA 128915 | || ||||||||| || | || | || | ||||| || ||||| | | Sbjct 711135 GGCATCTGGACTATGGCGTGCAGTTTAACCGCCTGATGTATCAGCGCCTGATTAAAGATG 711194 Query 128916 AAGACATTACATTCTTTAGCCCACATGATGTTCCTGATCTATATGATGCATTTTGTGCTG 128975 | | || || || || ||||| |||||| || | || |||||||| || | || | Sbjct 711195 ACTATATCACCTTGTTCAGCCCCTCTGATGTGCCGGGGCTGTATGATGCCTTCTTTGAAG 711254 Query 128976 ATCAAGAAGAATTTGAACGTCTGTATATTAAGTATGAA 129013 |||| ||| | |||||| | ||| | ||||||||| Sbjct 711255 ATCAGGAAAAGTTTGAAGCCTTATATGTGAAGTATGAA 711292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1103902486508832