Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_019544.1 Length=49335 Score E Sequences producing significant alignments: (Bits) Value seq6372 158 4e-34 seq26 136 1e-27 seq163424 123 8e-24 seq21230 111 5e-20 >seq6372 Length=86001 Score = 158 bits (174), Expect = 4e-34 Identities = 420/637 (66%), Gaps = 6/637 (1%) Strand=Plus/Minus Query 45488 AAAGAAGATCGGACGGGAACAGGCACATTGTCGGTGTTCGGCCGTCAGCTGCGCTTTAAC 45547 || ||||| || || || || ||||| | ||||||||| ||| |||| || || Sbjct 39810 AAGGAAGACCGTACCGGCACGGGCACCTACAGCGTGTTCGGCTACCAGATGCGTTTCGAC 39751 Query 45548 TTGCAGGACGGATTCCCGCTCGTGACGACGAAAAAGTTGCATATCCGCTCGATCATTTAT 45607 || || || ||||| |||| || || || |||| || | ||||||||||| | Sbjct 39750 CTGGCCGATGGTTTCCCCATCGTCACCACCAAGAAGTGCCACCTGCGCTCGATCATCCAC 39691 Query 45608 GAACTGCTCTGGTTTTTAAAAGGCGATACGAATGTTCGCTATTTGCAGGAGAATGGTGTG 45667 || ||||| ||||| | | ||||| || || | || | |||| || || || Sbjct 39690 GAGCTGCTGTGGTTCCTCCAGGGCGACACCAACATCAAGTACCTCAAGGACAACGGCGTC 39631 Query 45668 ACGATTTGGGACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCAATCTACGGCGCGCAA 45727 | || ||||||||||||||||| || |||||| | |||||||| |||||||| || Sbjct 39630 AGCATCTGGGACGAGTGGGCCGACGAGAACGGCAACCTCGGCCCGGTCTACGGCTACCAG 39571 Query 45728 TGGCGGTCGTGGAAAGGGGCTGACGGGAAAACGGTCGACCAAATTGCGGC--GGTCTTTA 45785 ||||| ||| | | | |||| | | ||||||| || | || | | | Sbjct 39570 TGGCGCAGCTGGCCGGCGCCCAACGGCGAGTCCATCGACCAGAT--CAGCAAGCTGGTCG 39513 Query 45786 AGGAAATCAAGCGCAACCCGAACTCGCGGCGGTTGCTTGTGAGCGCGTGGAACGTGGCAA 45845 || ||| |||||||| ||||||| || || | || || |||||| ||| Sbjct 39512 AGATGATCCGCAGCAACCCGGACTCGCGCCGTCTGATCGTCTCGGCCTGGAACCCGGCGC 39453 Query 45846 AGTTGGGGGAAATGAAGTTGCCCCCATGTCATTACGC-CTTTCAGTTTTACGTCGCGAAT 45904 | | | | | ||| | |||| || ||||| | ||| || ||||| |||||||| | Sbjct 39452 TGGTCGAGCAGATGGCGCTGCCGCCCTGTCA-TGCGCTGTTCCAGTTCTACGTCGCCGAC 39394 Query 45905 GGCCGGTTGTCATGCATGTGGCAACAGCGTTCTGTCGATACATTTCTAGGATTGCCGTTT 45964 ||| | |||| ||| | | ||||| || | || | || || || |||| || Sbjct 39393 GGCAAGCTGTCCTGCCAGCTCTACCAGCGCTCGGCGGACATCTTCCTCGGCGTGCCCTTC 39334 Query 45965 AACATCGCTAGCTATGCGCTGTTGACACATATGGTTGCCCAACAATGCGACCTCGATGTC 46024 |||||||| ||||| || ||| |||| | ||||| || || |||| ||| | Sbjct 39333 AACATCGCCAGCTACGCCCTGCTGACGCTGATGGTGGCGCAGGTCTGCGGCCTGCAGCCG 39274 Query 46025 GGCGAACTCATTTTCACCGGCGGCGACGTCCATTTGTACAAAAATCATCTGGAACAAGCG 46084 ||||| |||| | |||||||| ||| ||| ||||| || || | || || | Sbjct 39273 GGCGAGTTCATCTGGACCGGCGGTGACTGCCACCTGTACGCCAACCACATCGAGCAGACC 39214 Query 46085 AAACTGCAGCTGACGCGCGAGCCGCGCCCGCTGCCGA 46121 | ||||||||||| || |||||| |||||||||| Sbjct 39213 GACCTGCAGCTGACCCGTCAGCCGCTGCCGCTGCCGA 39177 >seq26 Length=549101 Score = 136 bits (150), Expect = 1e-27 Identities = 282/416 (68%), Gaps = 18/416 (4%) Strand=Plus/Plus Query 45494 GATCGGACGGGAACAGGCACATTGTCGGTGTTCGGCCGTCAGCTGCGCTTTAACTTGCAG 45553 || || || || || ||||| | ||||||||||||| ||| ||||||| || || Sbjct 240152 GACCGCACCGGCACCGGCACCTACTCGGTGTTCGGCCACCAGATGCGCTTCGACCTGGCC 240211 Query 45554 GACGGATTCCCGCTCGTGACGACGAAAAAGTTGCATATCCGCTCGATCATTTATGAACTG 45613 || || |||||| | |||| || || ||| |||| | |||||||| | |||||| Sbjct 240212 GAAGGCTTCCCGGTGCTGACCACCAAGAAGCTGCACCTGAAGTCGATCATCCACGAACTG 240271 Query 45614 CTCTGGTTTTTAAAAGGCGATACGAATGTTCGCTATTTGCAGGAGAATGGTGTGACGATT 45673 || ||||| | | ||||| || || | ||||| || |||| | || ||| || Sbjct 240272 CTGTGGTTCCTGCAGGGCGACACCAACATCCGCTACCTGAAGGAACACGGCGTGCGCATC 240331 Query 45674 TGGGACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCAATCTACGGCGCGCAATGGCGG 45733 ||||||||||||||||| || |||||||| ||||| || |||||||| || ||||| Sbjct 240332 TGGGACGAGTGGGCCGACGAGAACGGCGACCTCGGACCGGTCTACGGCTACCAGTGGCGC 240391 Query 45734 TCGTGG----AAAGGGGCTGACGGGAAAACGGTCGACCAAATTGCGGC--GGTCTTTAAG 45787 || ||| | || | |||| | | ||||||| || | || ||| | || Sbjct 240392 TCCTGGCCGACACCGGACGGACGCCACA----TCGACCAGAT--CAGCAAGGTGCTGGAG 240445 Query 45788 GAAATCAAGCGCAACCCGAACTCGCGGCGGTTGCTTGTGAGCGCGTGGAACGTGGCAAAG 45847 ||| ||||| ||| ||||||| ||| | | || ||||| |||||| |||| | Sbjct 240446 ATGATCCGGCGCACGCCGGACTCGCGCCGGCTCATCGTCAGCGCCTGGAACCCGGCACTG 240505 Query 45848 TTGGGGGAAATGAAGTTGCCCCCATGTCATTACGCC---TTTCAGTTTTACGTCGC 45900 | | || ||| | |||| || || | ||||| || ||||| ||||| || Sbjct 240506 GTCGACGACATGGCGCTGCCGCCCTGCC---ACGCCCTGTTCCAGTTCTACGTGGC 240558 >seq163424 Length=1083 Score = 123 bits (136), Expect = 8e-24 Identities = 205/296 (69%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 45437 ATGAAACAATATCTAGACTTGCTGCAAGACATCTTAGAAAACGGCGTGGAGAAAGAAGAT 45496 |||||||||||||| ||| || ||| || | || |||||| || ||| Sbjct 699 ATGAAACAATATCTCGACCTGATGCGCCACGTGCGCGAGAACGGCACCTTTAAGAGTGAT 758 Query 45497 CGGACGGGAACAGGCACATTGTCGGTGTTCGGCCGTCAGCTGCGCTTTAACTTGCAGGAC 45556 || || || || ||||| | ||||| |||| |||| |||||||| | || || Sbjct 759 CGCACCGGCACCGGCACTTACAGTGTGTTTGGCCATCAGATGCGCTTTGATCTGGCCGAG 818 Query 45557 GGATTCCCGCTCGTGACGACGAAAAAGTTGCATATCCGCTCGATCATTTATGAACTGCTC 45616 || || ||||| ||||| || || |||| ||| || || ||||| | || ||||| Sbjct 819 GGCTTTCCGCTGGTGACCACCAAGAAGTGTCATCTCAAGTCCATCATCCACGAGCTGCTG 878 Query 45617 TGGTTTTTAAAAGGCGATACGAATGTTCGCTATTTGCAGGAGAATGGTGTGACGATTTGG 45676 |||||||| | |||||||| || | || ||| || |||| || || || | || ||| Sbjct 879 TGGTTTTTGCAGGGCGATACCAACATCCGGTATCTGAAGGAAAACGGCGTCTCCATCTGG 938 Query 45677 GACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCAATCTACGGCGCGCAATGGCG 45732 ||||||||||| || || || ||||| || || || |||| ||| || ||||| Sbjct 939 GACGAGTGGGCAGACGAGAATGGCGACCTGGGGCCGGTCTATGGCTATCAGTGGCG 994 >seq21230 Length=25512 Score = 111 bits (122), Expect = 5e-20 Identities = 166/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 45450 TAGACTTGCTGCAAGACATCTTAGAAAACGGCGTGGAGAAAGAAGATCGGACGGGAACAG 45509 ||||| | | ||| ||||| |||| ||||||| || || | || || || || |||| Sbjct 9195 TAGACCTTTTACAACACATCCTAGACAACGGCGGCGACAAGGGCGACCGTACTGGTACAG 9136 Query 45510 GCACATTGTCGGTGTTCGGCCGTCAGCTGCGCTTTAACTTGCAGGACGGATTCCCGCTCG 45569 | ||| || || || || | ||| |||| ||| | || |||| ||||| || Sbjct 9135 GAACACGTTCAGTATTTGGTCATCAAATGCGTTTTGATTTATCTAACGGTTTCCCACTAC 9076 Query 45570 TGACGACGAAAAAGTTGCATATCCGCTCGATCATTTATGAACTGCTCTGGTTTTTAAAAG 45629 | || || ||||| | ||| ||||||| ||| | |||||| || |||||| | |||| Sbjct 9075 TCACCACAAAAAAAGTACATTTCCGCTCAATCGTCATTGAACTACTTTGGTTTCTTAAAG 9016 Query 45630 GCGATACGAATGTTCGCTATTTGCAGGAGAATGGTGTGACGATTTGGGACGAGTGG 45685 | ||||| ||||||| || || | || ||| |||||||||||||| || ||| Sbjct 9015 GTGATACCAATGTTCAATACTTAAAAGACAATAAAGTGACGATTTGGGATGAATGG 8960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157412766424504