Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_019923.1 Length=42689 Score E Sequences producing significant alignments: (Bits) Value seq20150 233 5e-57 seq179835 168 2e-37 >seq20150 Length=27475 Score = 233 bits (258), Expect = 5e-57 Identities = 351/496 (71%), Gaps = 2/496 (0%) Strand=Plus/Minus Query 37322 AGGTTCGGAGTGGAAGTG-CGGGAACGTGAGTGGTGACGCCGGGGATAGCCTTGGCGTTT 37380 ||| ||||| ||| ||| ||| | ||||| |||||| || | |||||||| ||| Sbjct 11106 AGGCTCGGAATGGC-GTGTCGGTAGCGTGAATGGTGAAAAGGGCCAGAGCCTTGGGGTTC 11048 Query 37381 GCCTGAAGGGTGAGAAGGCCGGGGTGTGGTCTGACTTCGCCGCAGGATCAAGCGGTGATC 37440 ||| ||||| |||||||| || || |||| || ||| | | || || ||| || | Sbjct 11047 ACCTCAAGGGCGAGAAGGCAGGTGTTTGGTGCGATTTCTCGACTGGCGAAACCGGAGACC 10988 Query 37441 TGCTGGACTTGTGGTGCGCTGCTCGGCGGTGCGACATGAAGACAGCCATGCAGGAAGCCA 37500 |||||||| ||||| | |||| ||| | ||||||||| || || || || || | Sbjct 10987 TGCTGGACCTGTGGCGTGCTGTTCGTGGTTGCGACATGGGTACGGCGCTGACCGAGGCTA 10928 Query 37501 AGGATTACTTGGGCGTGATCGAGCCAAGGCTATCGGCGCCGGCCAAGAAGGTTTACAGCC 37560 || || ||| | | ||| || | ||| ||||| ||||||| || | Sbjct 10927 AGTCCTATCTGGCCATCGCCGAACCCAAGCTCGATGCGCCATCCAAGAAATCCTATGTTC 10868 Query 37561 GGCCAGATAAGCCGAAGTGCAAGACGCCAGTTCAGGACAGTCCTGTGATGGCCTACTTGA 37620 | || || |||||||||||| |||| | ||||| ||| || ||||| ||| | Sbjct 10867 GCCCGGAGCGACCGAAGTGCAAGGCGCCTGCCCAGGAGTCTCCGGTCATGGCTTACCTCG 10808 Query 37621 AGGGTCGAGGCCTGACGGAAGAAACGATCAAGGCGTTCAAGATTGGTGAGCAGGGCCGTA 37680 || || || || | | |||||| ||| ||| |||||||| || ||| |||| || Sbjct 10807 CCGGCCGTGGGCTCAAGCCAGAAACCATCGCGGCATTCAAGATCGGCGAGAAGGGACGCG 10748 Query 37681 ATATCCTCTTCCCCTTCCTGCGCGATGGCCAGCTGATCCACTGGAAGACGCTGGGCGTAG 37740 | || | |||||||||||||| ||||| ||||||||||||||||| ||| || | | Sbjct 10747 ACATTGTGTTCCCCTTCCTGCGTGATGGAACCCTGATCCACTGGAAGACCCTGTGCATCG 10688 Query 37741 ATCGCCAGGACGGCAAGAAGAAGATCATGGCTGCCAAGGATTCCGAGCCGTGCCTGTTCG 37800 | ||| | ||||||||||||| ||| | || | | |||||| || ||||||||||||| Sbjct 10687 ACCGCGAAAACGGCAAGAAGAAAATCTTCGCCTCTAGGGATTCGGAACCGTGCCTGTTCG 10628 Query 37801 GCTGGCAGGCGATTCC 37816 |||||||||||||||| Sbjct 10627 GCTGGCAGGCGATTCC 10612 Score = 199 bits (220), Expect = 1e-46 Identities = 196/253 (77%), Gaps = 0/253 (0%) Strand=Plus/Minus Query 37694 CTTCCTGCGCGATGGCCAGCTGATCCACTGGAAGACGCTGGGCGTAGATCGCCAGGACGG 37753 ||||||||| ||||| ||||||||||||||||| ||| || | || ||| | |||| Sbjct 17224 CTTCCTGCGTGATGGAACCCTGATCCACTGGAAGACCCTGTGCATCGACCGCGAAAACGG 17165 Query 37754 CAAGAAGAAGATCATGGCTGCCAAGGATTCCGAGCCGTGCCTGTTCGGCTGGCAGGCGAT 37813 ||||||||| ||| | || | | |||||| || |||||||||||||||||||||||||| Sbjct 17164 CAAGAAGAAAATCTTCGCCTCTAGGGATTCGGAACCGTGCCTGTTCGGCTGGCAGGCGAT 17105 Query 37814 TCCGAGCGATGCGCGTGAGGTGACCATCACCGAAGGCGAGATTGACGCCATGAGTGCCTG 37873 ||| || || || || |||||||||||||| |||||||| |||||||||| ||||| Sbjct 17104 TCCCGATGACGCTCGAGAAGTGACCATCACCGAGGGCGAGATCGACGCCATGACCGCCTG 17045 Query 37874 GCAGTACGGACGGCCTGCTCTATCGGTCCCAATGGGAGGCGGCACCGGCGCCAAGCAGAA 37933 |||||| || || || ||| | ||||| || | || || || | || | || ||| Sbjct 17044 GCAGTATGGCCGACCAGCTTTGTCGGTTCCGTTCGGTGGTGGGAAGGGTGAGAAACAGGC 16985 Query 37934 TTGGATCGAGCAC 37946 |||||||| ||| Sbjct 16984 GTGGATCGAACAC 16972 >seq179835 Length=1001 Score = 168 bits (186), Expect = 2e-37 Identities = 240/333 (72%), Gaps = 6/333 (2%) Strand=Plus/Minus Query 12361 GCCGTATCGCCAAAGGGCGCCAAAGGCCTGATGCAACTGATGCCGGACACCGCCAAGGAA 12420 ||||| ||||| |||||||| ||||||||||| ||||||||||| |||||| || Sbjct 911 GCCGTGTCGCCGAAGGGCGCGCGCGGCCTGATGCAGCTGATGCCGGAGACCGCCCGCGAG 852 Query 12421 ATGGCCGCAGAACTCAACATCCCGTACAGCGAAGAGCGCCTGACTGCAGACCCTCAGTAC 12480 ||||||| |||||| | | |||| |||||||| ||||||||| ||| | | ||| Sbjct 851 GTGGCCGCCGAACTCGGCCTGCCGTTCAGCGAAGCGCGCCTGACCAGTGACGCCGACTAC 792 Query 12481 AACATGGCG-CTGGGCACTCAGTACCTGAATAAGATGCTGGGCAA--GTACGGTGGCAAC 12537 |||| | || || |||| | |||||| | |||||||| |||| |||| ||| | Sbjct 791 AACA-GACGCCTCGGCAGTGCCTACCTGGACAAGATGCT--GCAACGCTACGACGGCCAT 735 Query 12538 GAGACGCTGGCCGTGGCCGCATACAACGCCGGGCCTGGAGCTGTTGATAAGTGGGTGAAG 12597 || ||||||| |||| || ||||| |||||||| || || || | ||| | ||| Sbjct 734 CAGGCGCTGGCGCTGGCGGCCTACAATGCCGGGCCGGGGCGGGTCGACGAATGGCTCAAG 675 Query 12598 GAGTACGGCGATCCGCGCACCGGAGAGATCAGCAATCAGGACTTCATCGATAAGATTCCG 12657 | | ||||| ||||||| ||| |||||||| | | || ||||| ||||| Sbjct 674 GTCAATGGCGACCCGCGCAGCGGCGAGATCAGTACCGGCGCCTGGATCGAGCGCATTCCC 615 Query 12658 TACCAAGAGACCCGCGATTACACCAGCAAGATC 12690 || || || |||||||| ||||| ||| |||| Sbjct 614 TATCAGGAAACCCGCGACTACACGCGCAGGATC 582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136191084665832