Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq2234 127 2e-24 >seq2234 Length=154088 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| |||||||| || |||| |||||||| ||||| ||| ||||| Sbjct 11878 ATGCAAATTTTTGTAAAGACTCTAACAGGTAAAACAATTACATTAGAAGTCGAACCAAGT 11937 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | || ||||||| |||||||| ||| | ||| |||||| Sbjct 11938 GATACCATTGAAAATGTTAAAGCAAAAATCCAGGACAAAGAAGGAATTCCCCCAGATCAG 11997 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| | | || ||||| || || ||| | |||||| ||| || | ||||||||| Sbjct 11998 CAGCGTTTAATTTTTGCTGGTAAGCAACTAGAAGATGGCCGTACTCTGTCGGATTATAAC 12057 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||||||||||||||||||||| |||| |||||| | ||||||| || Sbjct 12058 ATTCAAAAAGAATCTACTCTGCATCTGGTTTTAAGACTCAGAGGAGGCAT 12107 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| ||||| | || || |||||||| ||| ||| |||||| Sbjct 12646 ATGCAAATTTTTGTTAAAACCCTGACTGGCAAAACCATCACCTTAGAAGTTGAACCTAGT 12705 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | || |||||| || ||||| || | ||| |||||| Sbjct 12706 GATACAATTGAGAATGTGAAAGCCAAAATCCAGGATAAAGAAGGTATTCCCCCAGATCAG 12765 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| | |||||||| || |||||| | |||||| | |||| || | |||||||| Sbjct 12766 CAGAGGTTAATCTTTGCTGGTAAACAACTTGAAGATGGCAGAACTTTGTCAGATTATAAT 12825 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || || || ||||||||||| ||| |||| | || || ||||||| || Sbjct 12826 ATCCAGAAGGAATCTACTCTACACTTGGTTCTCAGGTTGAGAGGAGGCAT 12875 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||||||||| ||||| || || || || ||||| ||| |||| |||||| Sbjct 11194 ATGCAAATATTTGTCAAAACTTTGACAGGGAAGACCATAACCTTAGAAAGTGAACCTAGC 11253 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || ||||| ||||||| || ||||| || | ||| ||| ||| Sbjct 11254 GACACAATAGAAAATGTCAAGACAAAAATCCAAGATAAAGAAGGTATTCCCCCAGACCAA 11313 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| | | || ||||| || || ||| | |||||| ||| | | || || ||| Sbjct 11314 CAGCGTTTGATTTTTGCTGGTAAGCAACTAGAAGATGGCCGTACTCTATCGGACTACAAC 11373 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| |||||||||||||| || | || || || | ||||||| || Sbjct 11374 ATTCAGAAAGAATCTACTCTACATCTAGTCTTGAGGCTTAGAGGAGGCAT 11423 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || ||||| |||| || |||||||| ||| ||| || ||| Sbjct 11422 ATGCAAATTTTCGTGAAAACCCTAACTGGCAAAACCATCACCTTGGAAGTAGAGCCTAGT 11481 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | |||| || |||| || |||||||| || | ||| |||||| Sbjct 11482 GACACAATAGAAAACGTCAAAGCCAAAATTCAA-GACAAAGAAGGTATCCCCCCAGATCA 11540 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 |||||| || || ||||| || || || ||||||||| | ||| | | ||||| || Sbjct 11541 ACAGAGGCTAATTTTTGCTGGTAAGCAGTTGGAAGATGGTCGTACTCTTTCTGATTACAA 11600 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||| |||||||||||||| | || | || | || || ||||||| || Sbjct 11601 CATCCAAAAAGAATCTACATTACATTTAGTTCTGAGGTTGAGAGGAGGTAT 11651 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||||||||| ||||| || | || || || ||||| || ||| |||||| Sbjct 10965 AATGCAAATATTCGTAAAGACTCTGACAGGGAAGACCATAACGTTAGAAGTTGAACCTAG 11024 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || |||| ||||||| || ||||| || | || ||| || Sbjct 11025 CGACACAATAGAAAATGTCAAAACAAAAATCCAGGATAAAGAAGGCATCCCTCCAGACCA 11084 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 |||||| | ||||| || || ||||| | |||||| | ||| || | ||||| || Sbjct 11085 GCAGAGATTGATCTTCGCCGGAAAACAGCTTGAAGATGGTCGTACTCTGTCTGATTACAA 11144 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || || |||||||| ||||| ||| |||| | || | ||||||| || Sbjct 11145 TATCCAGAAAGAATCCACTCTTCACTTGGTTCTGCGACTTAGAGGAGGTAT 11195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424470344649444