Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_020079.1 Length=147737 Score E Sequences producing significant alignments: (Bits) Value seq83234 161 9e-35 seq16664 91.5 1e-13 seq114 87.8 2e-12 seq5374 84.2 2e-11 >seq83234 Length=3891 Score = 161 bits (178), Expect = 9e-35 Identities = 512/786 (65%), Gaps = 6/786 (1%) Strand=Plus/Plus Query 38627 TTTTTGAAAGCAATTTCTTCCAAGCACGCAATCTTCAATCCTTGACAGTTCTCAATAGTC 38686 || ||||| || |||||||| ||||| || || || | ||||| | || || || ||| Sbjct 1958 TTGTTGAATGCTATTTCTTCTAAGCAAGCTATTTTATAGCCTTGCCTTTTTTCTATTGTC 2017 Query 38687 TGCACGAATTGACCAGCTTCCATCAGACTGGCGTGTGTTCCTGTGTCAAGCCAAGTAAAT 38746 | || ||||| ||||||| | | || | |||||||| || || | ||| | ||| Sbjct 2018 TCAACAAATTGTGCAGCTTCTAGTAAGCTTTCATGTGTTCCAGTATCTAACCATGCAAAG 2077 Query 38747 CCTCGTCCGAGAACTTCCACTTGTAACTTCCTGTCTTCTAGGTAGCTGCGATTGATATCA 38806 || || || | || || | | ||| || | || || || | ||| | | || Sbjct 2078 CCCCGACCTAAGCGCTCAACATTAAGCTTACTCTGTTTTAAATACATTTCATTTA-AGCA 2136 Query 38807 -GTGATCTCCAGTTCTCCACGCGCGGAAGGGGTTAC-TTCTAATGCACGTTGAATAACAG 38864 || || || ||||| || | ||||| | || |||| ||| | || ||||| Sbjct 2137 TGTAATTTCAAGTTCACCTCTTTGCGAAGGCTTCACCTTCTT-TGCTATATCAACAACAG 2195 Query 38865 AGTTATCATAGAAATACAAACCTGTGACAGCATAATCTGATTTAGGATTTTCAGGTTTCT 38924 ||||||| || ||||| | |||||| |||||| | | |||||||| ||||||||| | Sbjct 2196 AGTTATCGTAAAAATAAAGACCTGTAACAGCAAAGTTAGATTTAGGTACTTCAGGTTTTT 2255 Query 38925 CTTCAATAGAAATAGCTTGACGATTACTCCCAAATTCAACCACACCGAATCGTTCAGGAT 38984 |||| || |||||||||| || | |||| ||||| || || || ||||| |||| Sbjct 2256 CTTCTATTGAAATAGCTTTTTTATCTCGGTCAAACTCAACTACTCCAAAACGTTCTGGAT 2315 Query 38985 CTTTCACCAAATACCCGAAAATACAAGCTCCGCCCCAAACATCTACCATCTCACTGGCGT 39044 | || || || || |||| | |||||| | | | | | | || || | Sbjct 2316 CCTTTACTTGGTATCCAAAAACAGTAGCTCCTAAACCATTTTTTGCATTTTCTACAGCAT 2375 Query 39045 TAATCAGTAGTTTACCAAAGCTTTGTCCGAAGAATAGGTTGTCACCTAAAATAAGAGCAA 39104 | | ||| | ||| | || || | || | || || ||||| | || || Sbjct 2376 TTTTAAGTTTAGGAGTAAAACCTTCGCCATAAAAAATATTATCTCCTAATACTAGGCAAA 2435 Query 39105 CAGAGTCTTCTCCGATAAAATCTTTACCTATGATGAAAGCTTCCGCAAGACCTCGTGGCT 39164 || ||| | ||||| || || |||| || || |||| ||| |||||| ||||| Sbjct 2436 CATCGTCATTACCGATGAAGCTTTCGCCTAAAATAAATGCTTGCGCTAGACCTTCTGGCT 2495 Query 39165 CGGATTGGATTGCGTAAGTGAGTTTTATCCCAAACATAGACCCATCTCC-GAGAAGATAC 39223 | | || | || ||| | |||| || |||||| || |||||||| | || Sbjct 2496 CAGGCTGTACTGTATAACTTAGTTCAATGCCAAACTGTGAACCATCTCCTAATAACCGTT 2555 Query 39224 TCAAAGTCTTCCTGATCACCTGGTGTGGTGATGATTAAAATATCCTTAATGTCAGCCAAC 39283 | |||| | || ||| |||| ||||| || |||||||| || ||| |||| | | Sbjct 2556 TAAAAGAC-TCAGAATCTTCTGGGGTGGTTATAATTAAAATTTCTCGAATACCAGCAAGC 2614 Query 39284 ATCAATACCGATAAAGGGTAGTAGATCATGGGTTTGTCATACACAGGGAGCAATTGCTTG 39343 || || || || | |||||| |||||||| || || || || | || | || ||||| Sbjct 2615 ATTAAGACTGAAAGAGGGTAATAGATCATTGGCTTATCGTAAATGGGTAATAACTGCTTT 2674 Query 39344 CTCACACTGCGTGTTACCGGATGAAGGCGGGTTCCACTTCCTCCCGCCAAAATAATACCT 39403 || | ||||| |||| |||||| || ||| ||| || |||| || || ||| Sbjct 2675 GATACCCCCATTGTTATAGGATAAAGGCGAGTGCCAGATCCCCCAGCCAGGATTATTCCT 2734 Query 39404 TTCATA 39409 |||||| Sbjct 2735 TTCATA 2740 >seq16664 Length=35616 Score = 91.5 bits (100), Expect = 1e-13 Identities = 126/175 (72%), Gaps = 6/175 (3%) Strand=Plus/Minus Query 85164 ATTCAAATTGGTGAACCTTGGTGGTGGTATAATACAGCAAGTAAAATGCCTTGCATATAT 85223 || ||||| || || || |||||||||||||| || || || ||||||| || ||| Sbjct 13244 ATGCAAATAGGAGAGCCGTGGTGGTGGTATAACCAAGGTAGCAATTTGCCTTGTATCTAT 13185 Query 85224 GATTACACTACCAAACTGGCATTCAACACAGAAACAGGTTTATTTGCACAAGATGCAGGA 85283 ||||| | || ||||| || || || |||| || || || | ||||| ||| ||| Sbjct 13184 GATTATCCGACTAAACTTGCCTTTAATGCAGATACGGGCTTGTATGCACCTGATCTGGGA 13125 Query 85284 ACAAT-----AGATAAT-TATAAAACAGGAACGCCGTTTGACGAATACTATGCAT 85332 ||||| || ||| |||||||||||||||| | ||| |||| | | |||| Sbjct 13124 ACAATTTATGAGGCAATGAATAAAACAGGAACGCCATATGATGAATTCAAGGCAT 13070 >seq114 Length=395947 Score = 87.8 bits (96), Expect = 2e-12 Identities = 236/353 (67%), Gaps = 6/353 (2%) Strand=Plus/Minus Query 38636 GCAATTTCTTCCA-AGCACGCAATCTTCAATCCTTGACAGTTCTCAATAGTCTGCACGAA 38694 ||||||||||| | ||||| | || |||| ||||| | | |||||| ||| || || Sbjct 386566 GCAATTTCTTCAATAGCAC-CGATTTTCATGCCTTGTCTTTCTTCAATAACCTGTACAAA 386508 Query 38695 TTGACCAGCTTCCATCA-GACTGGCGTGTGTTCCTGTGTCAAGCCAAGTAAATCCTCGTC 38753 ||| || || | ||| | | | | || |||||||| || | ||||| |||||| Sbjct 386507 TTGCCCTGCCTGCATTAAGGATTGAATG-GTTCCTGTATCCAACCAAGCGGTTCCTCGGT 386449 Query 38754 CGAGAACTTCCACTTGTAACTT-CCTGTCTTCTAGGTAGCTGCGATTGATATCAGTGATC 38812 | | || | |||| || || ||| | || || || ||| | ||| || ||| Sbjct 386448 CAAATACCCCAACTTTCAATTTTCCTCTTTT-TAAATATTCCTTATTTACATCGGTAATC 386390 Query 38813 TCCAGTTCTCCACGCGCGGAAGGGGTTACTTCTAATGCACGTTGAATAACAGAGTTATCA 38872 |||| ||| ||||| ||||| ||| | | ||| | | ||| |||||| Sbjct 386389 TCCAATTCCCCACGATGAGAAGGCTTTATATTTTTAGCAATCTCTAACACATCATTATCA 386330 Query 38873 TAGAAATACAAACCTGTGACAGCATAATCTGATTTAGGATTTTCAGGTTTCTCTTCAATA 38932 |||||||| || |||| |||||||| | ||||| || | | |||||| ||||||||| Sbjct 386329 TAGAAATATAATCCTGGAACAGCATAGTTGGATTTTGGCTCTAAAGGTTTTTCTTCAATA 386270 Query 38933 GAAATAGCTTGACGATTACTCCCAAATTCAACCACACCGAATCGTTCAGGATC 38985 |||| | | | || | ||||||| || || || | ||||||||||| Sbjct 386269 GAAACCACGTTTCTATCTTTATCAAATTCCACGACGCCATAACGTTCAGGATC 386217 >seq5374 Length=95900 Score = 84.2 bits (92), Expect = 2e-11 Identities = 175/258 (68%), Gaps = 2/258 (1%) Strand=Plus/Plus Query 39742 GCATGATCCTCAACAAAAAGCCAGTCTCGCACCTGGTCGCCTTTACCATACACCGGAATC 39801 || |||||||| ||| |||||||||| || | | | ||| | ||||| | ||| | | Sbjct 25945 GCGTGATCCTCGACATAAAGCCAGTCGCGGATATTGCTGCCATCGCCATAGATCGGCAGC 26004 Query 39802 TCTTTATTCGTCAAGATACTTGTG-ATGATTTTTGGGATCAGCTTTTCTGGATGTTGATA 39860 ||| || | || ||| | ||||| |||||||||||||| || ||||| Sbjct 26005 GGTTTGC-CGGCCAGCGCGTTGAGGATGATCACCGGGATCAGCTTTTCGGGGAAGTGATA 26063 Query 39861 AGGCCCAAAGTTATTGGAGCAGTTGGTTATCACAACAGGCAAATCGTAGGTGCGGTGCCA 39920 ||||| |||| |||||||| ||||| | || || |||| | ||||| | ||| Sbjct 26064 GGGCCCGTAGTTGTTGGAGCAATTGGTCAGGACGACCGGCAGGCCATAGGTCTCGGCCCA 26123 Query 39921 AGCTTTCACAAGATGGTCAGATGCTGCCTTAGACGCACTGTACGGGCTTGAAGGGGCATA 39980 || || |||||||| || || ||||| || || || ||||| ||| |||| Sbjct 26124 GGCGCGGACCAGATGGTCCGAGGCCGCCTTGGAGGCCGAATAGGGGCTGCGCGGGTCATA 26183 Query 39981 AGCTGTCTCTTCGGTAAA 39998 | ||||||||||| || Sbjct 26184 GGGCGTCTCTTCGGTGAA 26201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471565587340320