Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_020080.1 Length=174413 Score E Sequences producing significant alignments: (Bits) Value seq5 201 1e-46 seq100896 122 1e-22 >seq5 Length=869209 Score = 201 bits (222), Expect = 1e-46 Identities = 324/462 (70%), Gaps = 8/462 (2%) Strand=Plus/Plus Query 40454 TCTCTACCGACTCCAATTATGGCGGGTGTACGTACTCCTACGCGCCAGTTCTCCAGTTGT 40513 || || ||||| || |||||| |||| || ||||| || || || |||||| | || Sbjct 710759 TCACTGCCGACACCTATTATGTCGGGCGTGCGTACCCCAACCCGTCAGTTCAGCTCCTGC 710818 Query 40514 GTAGTAATTGAATCGGGTGATTCTCTTGGTTCTCTTAACGCTGTAACCTC---TGCGATC 40570 ||| | ||||| | ||||| || | ||| | || || ||||| ||| || Sbjct 710819 GTACTGATTGAGTGTGGTGACAGCCTGGATTCGATCAATGCC---ACCTCCAGTGCCATT 710875 Query 40571 GTGAAGTATATTTCACAACGTGCTGGTATTGGGGTTAACGCGGGACATATTCGCGCAATG 40630 || || || | || || || || |||||||| ||||||| || | ||||||||| | Sbjct 710876 GTAAAATACGTGTCGCAGCGCGCAGGTATTGGTATTAACGCAGGCCGTATTCGCGCTTTA 710935 Query 40631 GGTTCTAAAATCCGTGGTGGTGAAGCTGTTCATACTGG-TGTGATTCCTTTCTGGAAACA 40689 ||| ||||||| ||| ||||| |||||||||| ||| || || || | || || Sbjct 710936 GGTAGCCCAATCCGTAATGGCGAAGCCTTTCATACTGGCTGT-ATCCCGTTTTATAAGCA 710994 Query 40690 TATTCAAACCGCTGTTAAATCCTGTTCACAGGGTGGCGTTCGTGGTGGTGCTGCAACACT 40749 | | || ||||| || ||| ||| || || || || || ||||||||||| || || || Sbjct 710995 TTTCCAGACCGCAGTAAAAAGCTGCTCGCAAGGCGGTGTGCGTGGTGGTGCCGCCACCCT 711054 Query 40750 GTATTATCCTTTCTGGCATCTGGAAGTTGAAAACCTTCTGGTGTTGAAGAACAACAAAGG 40809 || || || || |||||||||||||| ||| || ||||| |||| || ||| || Sbjct 711055 GTTCTACCCCTTGTGGCATCTGGAAGTGGAATCGCTGCTGGTACTGAAAAATAACCGCGG 711114 Query 40810 CGTAGAAGAAAACCGCGTTCGTCATCTTGATTATGGTGTACAGCTTAACCAGTTGATGTA 40869 |||||||| ||||| || | ||||| || ||||| || ||| |||||| ||||||| Sbjct 711115 TGTAGAAGAGAACCGGGTAAGGCATCTGGACTATGGCGTGCAGTTTAACCGCCTGATGTA 711174 Query 40870 TAAACGCTTAATGAATCGTGATTACATTACGCTGTTTAGTCC 40911 | | ||| | || || ||| || || || |||| || || Sbjct 711175 TCAGCGCCTGATTAAAGATGACTATATCACCTTGTTCAGCCC 711216 Score = 95.1 bits (104), Expect = 1e-14 Identities = 196/285 (69%), Gaps = 10/285 (4%) Strand=Plus/Plus Query 42237 TTTTCGAAAGCCTGACGCAAAAACAGCTTTCTTTCTTCTGGCGTCCGGAAGAAGTCGATC 42296 |||| |||| |||| |||| ||||| || |||||||| |||||||| | || Sbjct 712605 TTTTTGAAAAGCTGATCGAAAAGCAGCTGAGCTTTTTCTGGCGGCCGGAAGAGATTGACG 712664 Query 42297 TGTCTACTGACCGTATGCAGTATGCAAAACTT-CCTGAACATGAAAAA---ATCATTTTC 42352 | || || || || | | | || | || ||||| ||||||||| ||| || || Sbjct 712665 TCAGTAAAGATCGGATTGATT-TCCAGCAATTACCTGAGCATGAAAAACATATCTTTATC 712723 Query 42353 GATTCTAACCTACAGTATCAAACCCTGTTAGATACCATTCAGGGACGTGGGCCTAACCTC 42412 || || | || || || ||| | || | | ||||| || ||| ||| || Sbjct 712724 AGC---AATCTGAAATACCAGACGCTGCTGGACTCAGTGCAGGGTCGCTCGCCGAACGTC 712780 Query 42413 GCATTTTTGCCAATTGCATCCGATGTG-AGCATGGAAACCTGGATCGAAACGTGGGCGTT 42471 || | ||||| |||| || | | ||| ||||||||||||| ||||| ||||| || Sbjct 712781 GCCCTGTTGCCGATTGTGTCTATTCCGGAGC-TGGAAACCTGGATTGAAACCTGGGCCTT 712839 Query 42472 TAGTGAAACCATCCACAGCCGTAGTTACACGCATATTCAACGTAA 42516 |||||||||||| |||||||| || ||||| |||||| ||||| Sbjct 712840 TAGTGAAACCATTCACAGCCGCAGCTACACCCATATTATCCGTAA 712884 >seq100896 Length=2131 Score = 122 bits (134), Expect = 1e-22 Identities = 249/363 (69%), Gaps = 8/363 (2%) Strand=Plus/Plus Query 42159 ATCATAACCACTTAGAACAACCTATGTTTTTTGGTGAA--GATACTGGTGTTGCACGTTA 42216 || ||||||| ||| || |||| |||||||| || || | || |||| ||||||| Sbjct 555 ATAATAACCAATTACAAGAACCGATGTTTTTCGGCCAAACGGTAAACGTGT--CACGTTA 612 Query 42217 TGAATCGCAGAAACACAAAGTTTTCGAAAGCCTGACGCAAAAACAGCTTTCTTTCTTCTG 42276 || || || || | ||||||| || | |||| || ||||| ||||| || Sbjct 613 CGACCAACAAAAGTACCCTATCTTCGAAAAGCTAATCGAAAAGCAACTTTCGTTCTTTTG 672 Query 42277 GCGTCCGGAAGAAGTCGATCTGTCTACTGACCGTATGCAGTATGCAAAACTT-CCTGAAC 42335 |||||| |||||||| ||| | || |||||| | | | | ||| || || |||| Sbjct 673 GCGTCCTGAAGAAGTTGATGTAAGTAAAGACCGTCTTGACT-TCCAAGCGTTACCAGAAC 731 Query 42336 ATGAAAAAATCATTTTCGATTCTAACCTACAGTATCAAACCCTGTTAGATACCATTCAGG 42395 | ||||| ||| || |||| || | |||||||| || | |||| | || | Sbjct 732 ACGAAAAGCACATATTTTTAAGTAACTTAAAATATCAAACGCTTCTTGATAGTGTACAAG 791 Query 42396 GACGTGGGCCTAACCTCGCATTTTTGCCAATTGCATCCGATG-TGAGCATGGAAACCTGG 42454 | ||| |||||| | || || || || |||| || | |||| | ||||| ||| Sbjct 792 GCCGTTCACCTAACGTTGCGTTATTACCTATTGTGTCTATTCCTGAGT-TAGAAACTTGG 850 Query 42455 ATCGAAACGTGGGCGTTTAGTGAAACCATCCACAGCCGTAGTTACACGCATATTCAACGT 42514 || ||||| |||||||| ||||||||||| || |||||| |||||||| ||| ||| Sbjct 851 ATTGAAACATGGGCGTTCAGTGAAACCATTCATAGCCGTTCATACACGCACATTATTCGT 910 Query 42515 AAC 42517 ||| Sbjct 911 AAC 913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556736468318880