Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20]
180,236 sequences; 2,439,301,466 total letters
Query= NC_020488.1
Length=38682
Score E
Sequences producing significant alignments: (Bits) Value
seq164795 138 3e-28
seq34866 127 5e-25
seq50 122 2e-23
>seq164795
Length=1075
Score = 138 bits (152), Expect = 3e-28
Identities = 189/264 (72%), Gaps = 0/264 (0%)
Strand=Plus/Plus
Query 25828 CCACTTGCGCGTGCGCAACTTGCCTTCAATGTAAAGCTTTGAGCCTTTGCGTGTGTACTC 25887
||||| ||| || ||| |||||| || ||||| | || || || ||||| ||| ||
Sbjct 386 CCACTCGCGGGTCTGCAGCTTGCCCTCGATGTACACCTGCGAACCCTTGCGCAGGTATTC 445
Query 25888 GCCGGCCACCTCTGCCAACTTCCCGTATAACACAACACGGTGCCACTCTGTTTTTTCTAC 25947
|||||| | ||| || | ||| ||| | | |||| ||||||||||| || || || ||
Sbjct 446 GCCGGCGATCTCGGCGACCTTGCCGAACAGGGCAACGCGGTGCCACTCGGTCTTCTCGAC 505
Query 25948 CGGCTGCCCTGTCTGCTTGTCTTTGTACTGCTCACTGGTGGCAATGCTTAAATTTGCCAC 26007
| ||| || ||||||||||| | ||||||| |||||||| | ||| | || | ||
Sbjct 506 CTTCTGACCGGTCTGCTTGTCGGTCCACTGCTCGCTGGTGGCCAGGCTCAGGTTGGTGAC 565
Query 26008 GGCGGTACCGTTAGGCATATACCTAACTTCCGGGTCCTGGCCTAAGTTGCCGACAATGAT 26067
|| | ||| | |||| || | ||||||||||||||| || ||||||| | ||
Sbjct 566 CGCATTGCCGCTGGGCAGGTAGCGTGTTTCCGGGTCCTGGCCGCAGGTGCCGACCAGAAT 625
Query 26068 TACCTTGTTAATTCCGCGTGCCAT 26091
|| ||||||| || || |||||
Sbjct 626 GACTTTGTTAACCCCACGGGCCAT 649
>seq34866
Length=13211
Score = 127 bits (140), Expect = 5e-25
Identities = 224/322 (70%), Gaps = 6/322 (2%)
Strand=Plus/Plus
Query 25784 ACAACAATCTCAGTAGTGTACTGATCTTGACCTTGCTGGTTCTG-CCACTTGCGCGTGCG 25842
|| || || || |||||||| | ||||| ||| | | | || | ||| || ||||| |
Sbjct 5645 ACCACGATTTCTGTAGTGTATTTTTCTTGGCCT-GATTGATCAGTCCATTTACGCGTTTG 5703
Query 25843 CAACTTGCCTTCAATGTAAAGCTTTGAGCCTTTGCGTGTGTACTCGCCGGCCACCTCTGC 25902
|| ||||| ||||| | | ||| ||||| || ||| || || || || |||||
Sbjct 5704 TAAACGACCTTCGATGTACACTTGTGAACCTTTACGAAGGTATTCACCAGCAACTTCTGC 5763
Query 25903 CAACTTCCCGTATAACACAACACGGTGCCACTCTGTTTTTTCTACCGGCTGCCCTGTCTG 25962
| || || ||||||| ||||||||||| || || ||| | |||||||| |
Sbjct 5764 TAGTTTGCCAAATAACACGACACGGTGCCATTCAGTACGCTCTTGCATTTGCCCTGTGTT 5823
Query 25963 CTTGTCTTTGTACTGCTCACTG--GTGGCAATGCTTAAATTTGCCACGGCGGTACCGTTA 26020
|| |||| | | ||| ||| || |||||||| | ||| || ||| | | || |||
Sbjct 5824 TTTATCTT--TCCAGCTATCTGTCGTAGCAATGCTGATATTCGCTACGCCATTGCCATTA 5881
Query 26021 GGCATATACCTAACTTCCGGGTCCTGGCCTAAGTTGCCGACAATGATTACCTTGTTAATT 26080
|||||||| | ||||| || || |||||||| || || || | ||| || ||||| |
Sbjct 5882 GGCATATAACGTACTTCTGGATCTTGGCCTAAATTACCAACCAAGATAACTTTGTTCACA 5941
Query 26081 CCGCGTGCCATTGCGCTCCTCC 26102
||||||||||| | || ||||
Sbjct 5942 CCGCGTGCCATGGAACTTCTCC 5963
>seq50
Length=481860
Score = 122 bits (134), Expect = 2e-23
Identities = 211/307 (69%), Gaps = 0/307 (0%)
Strand=Plus/Minus
Query 25785 CAACAATCTCAGTAGTGTACTGATCTTGACCTTGCTGGTTCTGCCACTTGCGCGTGCGCA 25844
|||| || || || ||||| | ||| |||||||| | ||||||||| || || ||
Sbjct 154956 CAACGATTTCGGTGGTGTAACGCTCTACGCCTTGCTGATCCTGCCACTTACGGGTTTTCA 154897
Query 25845 ACTTGCCTTCAATGTAAAGCTTTGAGCCTTTGCGTGTGTACTCGCCGGCCACCTCTGCCA 25904
||||||||| || || | ||| |||||||| || || |||||||| | |||||||
Sbjct 154896 GCTTGCCTTCGATATACACCTTAGAGCCTTTACGCAGATATTCGCCGGCAATTTCTGCCA 154837
Query 25905 ACTTCCCGTATAACACAACACGGTGCCACTCTGTTTTTTCTACCGGCTGCCCTGTCTGCT 25964
| ||| | || || |||||||| || |||| ||| | | || || |
Sbjct 154836 GACGCTGGTAAATTACGACCCGGTGCCATTCGGTTTGCTCTTTCATTTCGCCGGTAGCTT 154777
Query 25965 TGTCTTTGTACTGCTCACTGGTGGCAATGCTTAAATTTGCCACGGCGGTACCGTTAGGCA 26024
| ||||| | ||| ||| |||||||| | || || |||||| || | ||||
Sbjct 154776 TATCTTTCCAGCTTTCAGAGGTCGCAATGCTCAGGTTAGCGACGGCGCCGCCCTGCGGCA 154717
Query 26025 TATACCTAACTTCCGGGTCCTGGCCTAAGTTGCCGACAATGATTACCTTGTTAATTCCGC 26084
|||| | |||||||| |||||||| | || |||| | || || ||||||||||| |
Sbjct 154716 TATAACGGACTTCCGGATCCTGGCCCAGATTACCGATTAAAATGACTTTGTTAATTCCAC 154657
Query 26085 GTGCCAT 26091
| |||||
Sbjct 154656 GCGCCAT 154650
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 123396128480608
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |