Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_020488.1 Length=38682 Score E Sequences producing significant alignments: (Bits) Value seq164795 138 3e-28 seq34866 127 5e-25 seq50 122 2e-23 >seq164795 Length=1075 Score = 138 bits (152), Expect = 3e-28 Identities = 189/264 (72%), Gaps = 0/264 (0%) Strand=Plus/Plus Query 25828 CCACTTGCGCGTGCGCAACTTGCCTTCAATGTAAAGCTTTGAGCCTTTGCGTGTGTACTC 25887 ||||| ||| || ||| |||||| || ||||| | || || || ||||| ||| || Sbjct 386 CCACTCGCGGGTCTGCAGCTTGCCCTCGATGTACACCTGCGAACCCTTGCGCAGGTATTC 445 Query 25888 GCCGGCCACCTCTGCCAACTTCCCGTATAACACAACACGGTGCCACTCTGTTTTTTCTAC 25947 |||||| | ||| || | ||| ||| | | |||| ||||||||||| || || || || Sbjct 446 GCCGGCGATCTCGGCGACCTTGCCGAACAGGGCAACGCGGTGCCACTCGGTCTTCTCGAC 505 Query 25948 CGGCTGCCCTGTCTGCTTGTCTTTGTACTGCTCACTGGTGGCAATGCTTAAATTTGCCAC 26007 | ||| || ||||||||||| | ||||||| |||||||| | ||| | || | || Sbjct 506 CTTCTGACCGGTCTGCTTGTCGGTCCACTGCTCGCTGGTGGCCAGGCTCAGGTTGGTGAC 565 Query 26008 GGCGGTACCGTTAGGCATATACCTAACTTCCGGGTCCTGGCCTAAGTTGCCGACAATGAT 26067 || | ||| | |||| || | ||||||||||||||| || ||||||| | || Sbjct 566 CGCATTGCCGCTGGGCAGGTAGCGTGTTTCCGGGTCCTGGCCGCAGGTGCCGACCAGAAT 625 Query 26068 TACCTTGTTAATTCCGCGTGCCAT 26091 || ||||||| || || ||||| Sbjct 626 GACTTTGTTAACCCCACGGGCCAT 649 >seq34866 Length=13211 Score = 127 bits (140), Expect = 5e-25 Identities = 224/322 (70%), Gaps = 6/322 (2%) Strand=Plus/Plus Query 25784 ACAACAATCTCAGTAGTGTACTGATCTTGACCTTGCTGGTTCTG-CCACTTGCGCGTGCG 25842 || || || || |||||||| | ||||| ||| | | | || | ||| || ||||| | Sbjct 5645 ACCACGATTTCTGTAGTGTATTTTTCTTGGCCT-GATTGATCAGTCCATTTACGCGTTTG 5703 Query 25843 CAACTTGCCTTCAATGTAAAGCTTTGAGCCTTTGCGTGTGTACTCGCCGGCCACCTCTGC 25902 || ||||| ||||| | | ||| ||||| || ||| || || || || ||||| Sbjct 5704 TAAACGACCTTCGATGTACACTTGTGAACCTTTACGAAGGTATTCACCAGCAACTTCTGC 5763 Query 25903 CAACTTCCCGTATAACACAACACGGTGCCACTCTGTTTTTTCTACCGGCTGCCCTGTCTG 25962 | || || ||||||| ||||||||||| || || ||| | |||||||| | Sbjct 5764 TAGTTTGCCAAATAACACGACACGGTGCCATTCAGTACGCTCTTGCATTTGCCCTGTGTT 5823 Query 25963 CTTGTCTTTGTACTGCTCACTG--GTGGCAATGCTTAAATTTGCCACGGCGGTACCGTTA 26020 || |||| | | ||| ||| || |||||||| | ||| || ||| | | || ||| Sbjct 5824 TTTATCTT--TCCAGCTATCTGTCGTAGCAATGCTGATATTCGCTACGCCATTGCCATTA 5881 Query 26021 GGCATATACCTAACTTCCGGGTCCTGGCCTAAGTTGCCGACAATGATTACCTTGTTAATT 26080 |||||||| | ||||| || || |||||||| || || || | ||| || ||||| | Sbjct 5882 GGCATATAACGTACTTCTGGATCTTGGCCTAAATTACCAACCAAGATAACTTTGTTCACA 5941 Query 26081 CCGCGTGCCATTGCGCTCCTCC 26102 ||||||||||| | || |||| Sbjct 5942 CCGCGTGCCATGGAACTTCTCC 5963 >seq50 Length=481860 Score = 122 bits (134), Expect = 2e-23 Identities = 211/307 (69%), Gaps = 0/307 (0%) Strand=Plus/Minus Query 25785 CAACAATCTCAGTAGTGTACTGATCTTGACCTTGCTGGTTCTGCCACTTGCGCGTGCGCA 25844 |||| || || || ||||| | ||| |||||||| | ||||||||| || || || Sbjct 154956 CAACGATTTCGGTGGTGTAACGCTCTACGCCTTGCTGATCCTGCCACTTACGGGTTTTCA 154897 Query 25845 ACTTGCCTTCAATGTAAAGCTTTGAGCCTTTGCGTGTGTACTCGCCGGCCACCTCTGCCA 25904 ||||||||| || || | ||| |||||||| || || |||||||| | ||||||| Sbjct 154896 GCTTGCCTTCGATATACACCTTAGAGCCTTTACGCAGATATTCGCCGGCAATTTCTGCCA 154837 Query 25905 ACTTCCCGTATAACACAACACGGTGCCACTCTGTTTTTTCTACCGGCTGCCCTGTCTGCT 25964 | ||| | || || |||||||| || |||| ||| | | || || | Sbjct 154836 GACGCTGGTAAATTACGACCCGGTGCCATTCGGTTTGCTCTTTCATTTCGCCGGTAGCTT 154777 Query 25965 TGTCTTTGTACTGCTCACTGGTGGCAATGCTTAAATTTGCCACGGCGGTACCGTTAGGCA 26024 | ||||| | ||| ||| |||||||| | || || |||||| || | |||| Sbjct 154776 TATCTTTCCAGCTTTCAGAGGTCGCAATGCTCAGGTTAGCGACGGCGCCGCCCTGCGGCA 154717 Query 26025 TATACCTAACTTCCGGGTCCTGGCCTAAGTTGCCGACAATGATTACCTTGTTAATTCCGC 26084 |||| | |||||||| |||||||| | || |||| | || || ||||||||||| | Sbjct 154716 TATAACGGACTTCCGGATCCTGGCCCAGATTACCGATTAAAATGACTTTGTTAATTCCAC 154657 Query 26085 GTGCCAT 26091 | ||||| Sbjct 154656 GCGCCAT 154650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123396128480608