Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_020489.1 Length=40489 Score E Sequences producing significant alignments: (Bits) Value seq1 304 3e-78 >seq1 Length=1655743 Score = 304 bits (336), Expect = 3e-78 Identities = 479/687 (70%), Gaps = 23/687 (3%) Strand=Plus/Minus Query 25694 CCGCCAAATGGCCGCAGTTCGCGCGCACCAGGGCTTTGGCCATCGGCGGGCACACGCTGT 25753 |||||| || || ||||| || ||||||| ||| | ||||| ||||||||| || | Sbjct 408018 CCGCCAGGTGCCCACAGTTTGCCCGCACCAAGGCCTCGGCCAACGGCGGGCAGACAGAAT 407959 Query 25754 TGCCGCAGCAGCTCACCTGCACGTTTCCCGGGAATGCGCGCCATGTCGGCGCATCGGTAT 25813 ||||||||||||| |||||||||| |||||| || || | ||||| | | | Sbjct 407958 TGCCGCAGCAGCTGACCTGCACGTCCTTCGGGAAGGCCCGGAAAGTCGGGCTGCCTATGT 407899 Query 25814 CGAGGCGCTCCCAAACGCCCTCGATCACGTAATCATCGGAGAAGCCTTGCGCGCGGAACA 25873 | | |||||| ||||||||||| |||||||| | |||||| ||||| ||||| Sbjct 407898 CCTGATTCTCCCACACGCCCTCGATGACGTAATCCGGCGGGAAGCCCTGCGCCGTGAACA 407839 Query 25874 GCTCGCGCGGGGTCAGCATCCGCATGCCGATATCGACCACGACGAATTTGGCGCCGTCGA 25933 | ||||||||||||||||| ||||||||||| ||||| | |||||| | ||| ||||| | Sbjct 407838 GTTCGCGCGGGGTCAGCATGCGCATGCCGATTTCGACGATGACGAACTCGGCACCGTCCA 407779 Query 25934 TCTGCAACGTGACGAATTCGCCGCCATCCCATGCACCATGCGCGCGCAGAAACTCTGCCA 25993 || ||| ||||| || | | |||||||| || || | ||||| | || || | Sbjct 407778 CGGTCAGCGTCACGAACTCCCGGTCATCCCATAACCCGTGATCACGCAGCAGCTGGGCGA 407719 Query 25994 CCTGCCGGGCCCGGGCGTGATGCTCTGGTCCGAAGGGAGGGGCCGCGAGCGATGCCTCGA 26053 | |||||| ||||||||| || || |||||||| || || || |||||||||||| Sbjct 407718 CGGCGCGGGCCTTGGCGTGATGTTCGGGGCCGAAGGGCGGCGCGGCCAGCGATGCCTCGC 407659 Query 26054 CATGCGCCATCCGGTCCTTGACGGTGACGGTGTGCATCGGGTCGGCATAGGTCGAGCCGT 26113 || ||||| ||||| ||| | || || |||| || || | | | | |||| Sbjct 407658 AGTGTGCCATGCGGTCTTTG--GTTGTGCGTATGCAGGGGTTCATCGGTGCTGGCCCCGT 407601 Query 26114 CGCCGGTCCCGTAGTATTTCGCCAAAAAAGCTGCGACCGGCATTTGATGCGATCCTGTCT 26173 |||| || || |||||||| || || || || |||||||| ||||||| || ||| Sbjct 407600 CGCCCGTGCCATAGTATTTTGCGAAGAACGCCGCGACCGGGGTTTGATGGCTGCCGCTCT 407541 Query 26174 GGCTGATAGTGCTCATGGG---ATC---------GCGCGCATCGTGACCGGTCACGC--- 26218 ||| ||| || |||||| ||| || || || | ||| ||||| Sbjct 407540 GGCAGATCGTCGCCATGGGGGCATCGGCCGGTCGGCCCGGATTGACGCCGCCCACGCGGC 407481 Query 26219 ------CAGTGTGGTGCTGGGCCAGGAAGGCGGCGCCGAGGGCATGCTTGATGCCGCCAG 26272 | ||| ||||| || ||||| || ||| || | || || || ||||| | Sbjct 407480 GGCTGTCGTTGTTCTGCTGTGCTAGGAAAGCAGCGACGGGCGCGTGTTTCTGCCCGCCCG 407421 Query 26273 CGACGACGGTGCCAAGAGGCTGGCCGAGGTCGAGCGCGCGCGGCGCTTGCCCGGGCCGCT 26332 |||| || ||||| | || | || ||| || |||||||||||||| || | ||| | Sbjct 407420 CGACCACAGTGCCCAACGGGCGCTGGATGTCTAGGGCGCGCGGCGCTTGACCCGCCCGTT 407361 Query 26333 CGCCGTATCCGGTCTGCACCAGCGTCG 26359 | ||||| |||||||| | || ||||| Sbjct 407360 CTCCGTAGCCGGTCTGGATCATCGTCG 407334 Score = 286 bits (316), Expect = 9e-73 Identities = 547/793 (69%), Gaps = 45/793 (6%) Strand=Plus/Minus Query 26750 TGCCCCGGGCAAGCCGCGCCAGGGTGTT----TTCGGCGAGCGGACGGATCGCGCGCAGG 26805 |||| || || | || || |||||||| ||| | | ||||||| |||||||| Sbjct 406910 TGCCACGCGCCACGCGGGCGAGGGTGTTGGGTTTCAGAGGCCGGACGG----CGCGCAGG 406855 Query 26806 CCGTGCTTTGCCATGATCTCCTGCGCGGTGTCGAAGATGCTCGGGCACGGTAGAGACCAG 26865 |||||||| |||||||| || | |||||| ||||| |||||| | ||||||||| Sbjct 406854 CCGTGCTTGGCCATGATGTCGGCAGAGGTGTCAAAGATCGACGGGCAGGACAGAGACCAG 406795 Query 26866 TCGATGCACTCGGCGGCAGCGCGCCACGGCTTGAGCCTGCCCTTGCGGACCGCCGGGCTT 26925 |||||||| || || || | |||||||||||| ||| |||||||||||||| | | Sbjct 406794 TCGATGCATTCCGCCGCGGTGCGCCACGGCTTCAGCTTGCCCTTGCGGACCTCATCCGAT 406735 Query 26926 TTCGGATCTCCATGCGTCGGTGCAGGCCAGACGATCCGGCGGCCATCGCAGCGCGCCACC 26985 | ||| || || || || || |||||||||||| || ||| | ||| |||| Sbjct 406734 TCCGGGTCGCCGTGGGTGGGCTTTGGCCAGACGATCTTTTCGCGGTCGAACCGCACCACG 406675 Query 26986 AGAAACAGGCGCTTGCGGATCGTAGGGGCGCCGAAGTCGCAGGCGCGCAGCTCGCGCCAT 27045 | ||||||||||||||||| || |||| ||| |||| ||||||||||| |||||||| Sbjct 406674 ACGAACAGGCGCTTGCGGATAGTCGGGGTGCCATAGTCTCAGGCGCGCAGTTCGCGCCAC 406615 Query 27046 TCGACGCGATAGCCGCGCTCGCGCAGCTGGC--GCACCCACAGCTCAAATGTTT------ 27097 | || ||| ||| | |||||| || | ||| ||| | | || |||| Sbjct 406614 TGGATGCGCCCGCCAAGACGGCGCAG-TGCCTTGCA-CCATGCCGCGAAGGTTTCGCCGC 406557 Query 27098 ---GGCCGGCGAATTCTTTGATCGGCTGGCCGTCCTCGCCCACCGGCCCCCAGGTCGTGA 27154 || ||| | | | | | || | || ||| || ||||||||||| || Sbjct 406556 GCCGGTCGGGGCAGGGCATCAACCCCTTGTCGGTTTCGATCAGTGGCCCCCAGGTGCGGA 406497 Query 27155 ACTCCTCGACGTTTTCGAGAAGGATCACGTCAGGGCG-----CTGCGCGCGGG--GC--- 27204 ||||||| || || || | | | ||| || ||| ||| | || || Sbjct 406496 ACTCCTCCACATTCTCCACCACCACCACATCCACGCGCCCGCCTGATTTCTGGATGCGCT 406437 Query 27205 AGATCCGCCCAGCGGATCACCACCCACGCGAGATCGCGGATATTGCG---GTCGCGGACG 27261 ||||| || | |||| | |||||| ||||||||||| ||||| | | || || Sbjct 406436 CGATCCATCC-GGGGAT---GATCCACGCCAGATCGCGGATGTTGCGCTTGACCGGGGCG 406381 Query 27262 CTTGCGCCCTTCGCCTTCGAGAAATGCTTGCAGTCCGGCGAGGCCCATACCATGCCGACC 27321 | ||||||| ||||| ||| |||||||||||||| | ||| | || ||||| Sbjct 406380 C---CGCCCTTGGCCTTGCTGAAGTGCTTGCAGTCCGGGCTGAACCACATCAGGCCGA-T 406325 Query 27322 TTGCGGCCCGCG-GTCACGGTGGCCGGGTCAACGTCCCAGATG-TTGCTGTCGAGATGCA 27379 ||| ||||| | | ||| ||| || ||| ||| | || | | | || |||| Sbjct 406324 GTGCCGCCCGTGCATGTGGGTCAGCGGATCGACGCGATAGACGTTTTCCGAC-AGGTGCA 406266 Query 27380 ATGTCTCGGGGTGGTTGGCTGCATGCAGCGCCAGCGCCGCGGCAGAGTGGTTGATGGCGA 27439 |||||||||||||| || ||||| ||||||||||| || | ||||||||| |||| Sbjct 406265 GCGTCTCGGGGTGGTTCGCCGCATGTAGCGCCAGCGCTGCCTCGCTGTGGTTGATCGCGA 406206 Query 27440 CATCGGGCGAGCGGCCAAGGGCCTGCTCGATGCCGGTCGAGGCGCCGCCGCCTCCGGCAA 27499 ||| || ||||||||||||| |||||| |||||||||||||||||||| ||||||| Sbjct 406205 TATCCGGGCTGCGGCCAAGGGCCATCTCGATCCCGGTCGAGGCGCCGCCGCCACCGGCAA 406146 Query 27500 AACAGTCGATGAT 27512 | | ||| | ||| Sbjct 406145 AGCTGTCCACGAT 406133 Score = 215 bits (238), Expect = 1e-51 Identities = 210/268 (78%), Gaps = 2/268 (1%) Strand=Plus/Minus Query 26345 TCTGCACCAGCGTCGGCGCGATCAGGGCGTGCTGGATGCCGCCCACCGTAACGGTCCCCA 26404 ||||| ||| |||||||||||| ||| ||||| | ||||||||| || | ||| |||| Sbjct 407246 TCTGCGACAGGATCGGCGCGATCACGGCATGCTGCACGCCGCCCACAGTGATGGTGCCCA 407187 Query 26405 TCGGATCGGTCAGCGGATATTCCCTGCGCCCGCCGCTGTAGCCGTGGGCGATGCTGGCGA 26464 ||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||| Sbjct 407186 GCGGATCGGTCAGCGGGTATTCCCGGCGCCCGCCAGAATAGCCGTGGGCGATGCTGGCGA 407127 Query 26465 GGTATGTGGCCACAATGCCCAGCGGCGCGGCCCCGCCCGGCTTCTTGATCCAGCTGTTCG 26524 || | | |||| | ||| |||||| || |||||||| |||||||||||||| |||| Sbjct 407126 GGCAAGGCGCCAGCAGGCCATACGGCGCTGCACCGCCCGGTTTCTTGATCCAGCTATTCG 407067 Query 26525 CGGTCACCGTGGGCATCGGGTCGCGCGGAT-CTGCGCCCGTCGCGCCCCCGTTGAACCGG 26583 ||||||| || ||| || ||||| || |||| || || ||||| ||||| || ||| Sbjct 407066 CGGTCACGGTTACCATGGGCGCGCGCAAATCCTGC-CCGGTGGCGCCGCCGTTTAAGCGG 407008 Query 26584 GTGAGGCTGGGCACGATCACCGCGTTTT 26611 |||| | ||||| | || || |||| Sbjct 407007 GTGATGGACGGCACCACCAGAGCCTTTT 406980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129166152395432