Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_020841.1 Length=40803 Score E Sequences producing significant alignments: (Bits) Value seq40996 120 8e-23 seq152 86.0 2e-12 >seq40996 Length=10690 Score = 120 bits (132), Expect = 8e-23 Identities = 188/269 (70%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 13037 AAAGAGTTTAATTGTCCAGTTATCGCACTGTCACAGCTTAACCGTAGCTTAGAGAGCCGA 13096 ||||| | |||||||| || || ||||| ||||||||||||||||| |||||| |||| Sbjct 1386 AAAGAAATGAATTGTCCTGTGATTGCACTTTCACAGCTTAACCGTAGTCTAGAGAACCGA 1445 Query 13097 CCAAACAAACGGCCCATCATGAGCGACCTAAAAGAGTCAGGGGCCATTGAGGAAAACGCT 13156 ||||||||||| || | ||| ||| || || ||||| || || ||| | | || Sbjct 1446 CCAAACAAACGCCCTGTTATGTCAGACTTACGTGAATCAGGAGCGATCGAGCAGGATGCC 1505 Query 13157 GACGTGATTATGTTCCTGTACCGCGATGAGGTTTATAACGAAAACTCGGACCAAAAAGGT 13216 || |||| |||||| | ||||| ||||| || |||||| || | || | || ||| Sbjct 1506 GATTTGATCATGTTCATCTACCGTGATGAAGTCTATAACAAAGAATCAAAAGAAGCAGGC 1565 Query 13217 ATTGCTGAGGTAGGAGTGGCTAAAAACCGTCAAGGGCCAGTTGGGACCGTAAGACTAGCG 13276 | || || | | | |||| | ||| | || || |||| || || | || || Sbjct 1566 ACAGCAGAAATCATTATCGGTAAACAACGTAACGGTCCGATTGGTACTGTTCGTCTTGCC 1625 Query 13277 TTTGAGGGTGAATACAGCCGCTTTAGCAA 13305 ||||| ||| |||| | || ||||| || Sbjct 1626 TTTGAAGGTCAATATACACGTTTTAGTAA 1654 >seq152 Length=367798 Score = 86.0 bits (94), Expect = 2e-12 Identities = 240/359 (67%), Gaps = 11/359 (3%) Strand=Plus/Minus Query 5034 CTTGCTGCTGACCACCGT--TGGCGCTA-TCTAGCATTTGCATCTGCATAGCTTTAACCT 5090 |||| |||| |||||| | || || | || ||||||||||| || | | || | Sbjct 236585 CTTGATGCTCACCACCTTGCTGACGAGAATCGAGCATTTGCATTTGGTCACCACGAATTT 236526 Query 5091 CGGTCACGTAGCGGTCAGTTCCATCTTGCGCTTGATATTTGCGAGTGCTTAATTTGCCCT 5150 |||| ||| || || |||| ||| || ||| ||| || | ||| || | Sbjct 236525 CGGTGCTGTAACGCTCTTGACCATTTTGGTCTGTCCATTGGCGCGTACGCAATGAACCTT 236466 Query 5151 CGATATAAACTTTTGAGCCTTTACGTAAATACTGTGCTGCAATCTCACCAAGACGGTTAG 5210 ||||||||||||| || ||||||||||| || || |||||| ||||| ||||||||| Sbjct 236465 CGATATAAACTTTCGAACCTTTACGTAAGTATTGCTGTGCAATTTCACCTAGACGGTTAT 236406 Query 5211 CCA--GCGAAACTTTATGCCATTCGGTAGCTTCACGCTTTTCGCCTGATTGCTTATCAGT 5268 || ||| || ||||||||| || ||| |||||||| | ||||| || Sbjct 236405 GCAATACGATAC--GATGCCATTCTGTTTGTTCTTTTCGTTCGCCTGTATTTTTATCTGT 236348 Query 5269 CCATTGCTCACTTGTTGCCACTGATATGTTGG-CAATGCTGCCACCGTTGCTGAATTGCT 5327 ||| ||||||||||| | || | | || || || | ||||| || ||| | | Sbjct 236347 CCACGATTCACTTGTTGCAATCGAAAATTGGGTCAGTGAT-CCACCATT-TGGAAAGGTT 236290 Query 5328 TTACT-TCTGGATCAGCGCCCAATGTACCGATGATGATTACTTTGTTTACGCCTCTCAT 5385 || | || ||||| ||||| ||||||| | || ||||| || || || | ||| Sbjct 236289 TTTGTCTCAGGATCTTTACCCAAAGTACCGACTAAAATAACTTTATTCACACCACGCAT 236231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130168801819480