Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_020873.1 Length=158621 Score E Sequences producing significant alignments: (Bits) Value seq57648 86.0 6e-12 seq21230 82.4 8e-11 >seq57648 Length=6294 Score = 86.0 bits (94), Expect = 6e-12 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 157663 AATGGTGCCGACTGTAGGAATCGAACCCACGACCTACTGCTTACAAGGCAGTCGCTCTAA 157722 |||||||||| | || ||| |||||| |||||||||||| ||||||| |||| ||||| | Sbjct 174 AATGGTGCCGGCAGTGGGACTCGAACTCACGACCTACTGATTACAAGTCAGTTGCTCT-A 232 Query 157723 CCAACTGAGCTA 157734 |||||||||||| Sbjct 233 CCAACTGAGCTA 244 >seq21230 Length=25512 Score = 82.4 bits (90), Expect = 8e-11 Identities = 139/197 (71%), Gaps = 7/197 (4%) Strand=Plus/Minus Query 12307 AAGGG-GATCGTACGGGAACAGGTACAATGTCCGTATTCGGTGCTCAGATGCGTTTCGAC 12365 ||||| || ||||| || ||||| ||| || ||||| ||| ||| |||||||| || Sbjct 9157 AAGGGCGACCGTACTGGTACAGGAACACGTTCAGTATTTGGTCATCAAATGCGTTTTGAT 9098 Query 12366 TTATCGGAAGGGTTCCCGTTACTTACAACGAAAAGAGTCCCTTTCCGT---ATCGTGGCA 12422 ||||| | || ||||| |||| || || |||| ||| | |||||| ||||| || Sbjct 9097 TTATCTAACGGTTTCCCACTACTCACCACAAAAAAAGTACATTTCCGCTCAATCGT--CA 9040 Query 12423 CAAGAGCTATTGTGGTTTGTTAAAGGGAGCACGGATTTAAAGTACTTACTAGATAATAAC 12482 || ||| | |||||| ||||||| || || | | |||||| ||| ||||| Sbjct 9039 TT-GAACTACTTTGGTTTCTTAAAGGTGATACCAATGTTCAATACTTAAAAGACAATAAA 8981 Query 12483 GTACACATTTGGGATGA 12499 || ||||||||||| Sbjct 8980 GTGACGATTTGGGATGA 8964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506315919795360