Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq2234 143 4e-29 seq122317 93.3 6e-14 >seq2234 Length=154088 Score = 143 bits (158), Expect = 4e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| ||||||| | |||||||| || || || |||||||| ||| Sbjct 12106 ATGCAAATTTTTGTTAAAACCCTCACTGGAAAGACCATCACCTTAGAAGTAGAACCAAGC 12165 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| || |||| ||||| ||||||||||||||||| || ||||| || Sbjct 12166 GATACAATTGAAAATGTCAAAACAAAAATTCAAGATAAAGAAGGCATTCCACCAGATCAG 12225 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||| |||||| ||| ||||| ||||| |||||| | || | || ||||| || Sbjct 12226 CAAAGGCTGATTTTTGCTGGTAAACAGCTTGAAGATGGGCGTACCCTGTCGGATTACAAC 12285 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || |||||| | || || ||| |||| | ||||||||||| || Sbjct 12286 ATCCAAAAAGAGTCTACACTCCATCTAGTTCTCAGATTAAGAGGAGG 12332 Score = 143 bits (158), Expect = 4e-29 Identities = 141/182 (77%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| ||||||| ||||||| ||||| || || |||||||| ||| | | Sbjct 12646 ATGCAAATTTTTGTTAAAACCCTGACTGGCAAAACCATCACCTTAGAAGTTGAACCTAGT 12705 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || |||||| ||||| || ||||||||||| || || ||||| || Sbjct 12706 GATACAATTGAGAATGTGAAAGCCAAAATCCAGGATAAAGAAGGTATTCCCCCAGATCAG 12765 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || || || | ||| ||||| || || |||||| ||||||||| |||||||||||| Sbjct 12766 CAGAGGTTAATCTTTGCTGGTAAACAACTTGAAGATGGCAGAACTTTGTCAGATTATAAT 12825 Query 156003 AT 156004 || Sbjct 12826 AT 12827 Score = 125 bits (138), Expect = 1e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || | || || ||||| |||||||||||||||||| | Sbjct 11878 ATGCAAATTTTTGTAAAGACTCTAACAGGTAAAACAATTACATTAGAAGTCGAACCAAGT 11937 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| || ||| ||||| || || |||||||| || || ||||| || Sbjct 11938 GATACCATTGAAAATGTTAAAGCAAAAATCCAGGACAAAGAAGGAATTCCCCCAGATCAG 11997 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | || |||| ||| |||||||| || |||||| | | ||| | || |||||||| Sbjct 11998 CAGCGTTTAATTTTTGCTGGTAAGCAACTAGAAGATGGCCGTACTCTGTCGGATTATAAC 12057 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || ||||| | || || ||| | || |||||| | ||||| || Sbjct 12058 ATTCAAAAAGAATCTACTCTGCATCTGGTTTTAAGACTCAGAGGAGG 12104 Score = 116 bits (128), Expect = 5e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||||||||| | || || |||| || || || || || |||||||| ||| | Sbjct 10965 AATGCAAATATTCGTAAAGACTCTGACAGGGAAGACCATAACGTTAGAAGTTGAACCTAG 11024 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | || ||| || |||| ||||| || |||||||||||||| |||||||| || Sbjct 11025 CGACACAATAGAAAATGTCAAAACAAAAATCCAGGATAAAGAAGGCATCCCTCCAGACCA 11084 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || |||||||| | ||||| || ||||| |||||| | ||| | || ||||| || Sbjct 11085 GCAGAGATTGATCTTCGCCGGAAAACAGCTTGAAGATGGTCGTACTCTGTCTGATTACAA 11144 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 ||| ||||| | || ||||| || || | || | ||||| ||| Sbjct 11145 TATCCAGAAAGAATCCACTCTTCACTTGGTTCTGCGACTTAGAGGAGGT 11193 Score = 116 bits (128), Expect = 5e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | ||||| ||||| || || || || || |||||| ||| | Sbjct 11194 ATGCAAATATTTGTCAAAACTTTGACAGGGAAGACCATAACCTTAGAAAGTGAACCTAGC 11253 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||| || || | ||||| |||||||||||||| || || ||||| ||| Sbjct 11254 GACACAATAGAAAATGTCAAGACAAAAATCCAAGATAAAGAAGGTATTCCCCCAGACCAA 11313 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | ||||||| ||| |||||||| || |||||| | | ||| |||| || || || Sbjct 11314 CAGCGTTTGATTTTTGCTGGTAAGCAACTAGAAGATGGCCGTACTCTATCGGACTACAAC 11373 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || ||||| | || || ||| |||| || || | ||||| || Sbjct 11374 ATTCAGAAAGAATCTACTCTACATCTAGTCTTGAGGCTTAGAGGAGG 11420 Score = 96.9 bits (106), Expect = 5e-15 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || ||||||||||||| || || | ||||| || | | Sbjct 10738 ATGCAGATCTTTGTGAAGACTCTGACTGGAAAAACCATCACTCTTGAAGTGGAGCCTAGT 10797 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||| ||||| || || ||||||||||| || || || ||||| || Sbjct 10798 GACACAATCGAAAATGTGAAGGCCAAGATTCAAGATAAAGAGGGTATCCCACCAGATCAG 10857 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || |||| | ||| || |||||||| |||||| | | ||| | |||||||| | Sbjct 10858 CAGAGGCTGATCTTTGCTGGAAAGCAGCTTGAAGATGGCCGTACTCTTTCAGATTACA-- 10915 Query 156003 ATATCCAAAGAG 156014 ||||||||| || Sbjct 10916 ATATCCAAAAAG 10927 Score = 96.9 bits (106), Expect = 5e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 155850 GGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAA 155909 || ||||| ||||| | ||||| ||| ||||| ||| || |||||| |||| Sbjct 12445 GGTAAAACCATTACTCTTGAAGTTGAACCAAGTGATACCATTGAGAATGTGAAAGCTAAA 12504 Query 155910 ATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAG 155969 || |||||||||||||| || |||||||| || || || || || | || ||||| || Sbjct 12505 ATTCAAGATAAAGAAGGTATTCCTCCAGATCAGCAGAGGTTAATCTTCGCAGGTAAACAA 12564 Query 155970 CTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAAGAGGCGACGCTTCATTTA 156029 || |||||| | |||| |||| || ||||| || ||||| | || || ||| || Sbjct 12565 CTTGAAGATGGCCGAACCCTATCGGACTATAACATTCAGAAAGAATCAACTCTGCATCTA 12624 Query 156030 GTGTTAAG 156037 || || || Sbjct 12625 GTCTTGAG 12632 >seq122317 Length=1447 Score = 93.3 bits (102), Expect = 6e-14 Identities = 118/160 (74%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 5136 CGGCCGGGATTCCGACCGATAGTTTTTTATTATAATATTCTACTAATTCTTTAGATTTTA 5195 ||||||| |||| | ||| |||| ||| |||| | || | | ||||||| ||| Sbjct 1290 CGGCCGGAATTCGGTCCGCCAGTTAAATATG-TAATTATATAGTTCT-CTTTAGAATTTT 1347 Query 5196 TATTTTCGTACCAATGTTTATATTCCTTTCCTCCATCTTTGCACAGCTTGGTTGCGTTAA 5255 ||||||| | || | |||| | ||| ||||| ||||| || || || || || |||| Sbjct 1348 TATTTTCTAATCATTTTTTAAACCTCTTACCTCCTTCTTTACATAGTTTTGTAGCATTAA 1407 Query 5256 AATAACCTGTATTTTTATCAATTATTAGTTTAAAATCACC 5295 |||| |||||||||||||| |||| || || |||||| || Sbjct 1408 AATATCCTGTATTTTTATCTATTACTAATTCAAAATCTCC 1447 Score = 93.3 bits (102), Expect = 6e-14 Identities = 118/160 (74%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 223456 GGTGATTTTAAACTAATAATTGATAAAAATACAGGTTATTTTAACGCAACCAAGCTGTGC 223515 || |||||| || || |||| |||||||||||||| |||||||| || || || || || Sbjct 1447 GGAGATTTTGAATTAGTAATAGATAAAAATACAGGATATTTTAATGCTACAAAACTATGT 1388 Query 223516 AAAGATGGAGGAAAGGAATATAAACATTGGTACGAAAATATAAAATCTAAAGAATTAGTA 223575 ||||| ||||| ||| | |||| | || | ||||||| ||| ||||||| | | || Sbjct 1387 AAAGAAGGAGGTAAGAGGTTTAAAAAATGATTAGAAAATAAAAATTCTAAAG-AGAACTA 1329 Query 223576 GAATATTATAATAAAAAACTATCGGTCGGAATCCCGGCCG 223615 | |||| ||| |||| ||| | |||| ||||||| Sbjct 1328 TATAATTA-CATATTTAACTGGCGGACCGAATTCCGGCCG 1290 Score = 89.7 bits (98), Expect = 8e-13 Identities = 99/131 (76%), Gaps = 2/131 (2%) Strand=Plus/Minus Query 123128 TTTTAAACTAGTAATCGATAAAACTAATGGTTATTTTAATGCAACTAAATTATGTAAAGA 123187 |||| || ||||||| ||||||| || || ||||||||||| || ||| |||||||||| Sbjct 1442 TTTTGAATTAGTAATAGATAAAAATACAGGATATTTTAATGCTACAAAACTATGTAAAGA 1383 Query 123188 CGGTGGTAAAAGATTCAAACATTGGAATGAAAATGATAAATCTAAAGAAATAATTATATA 123247 || ||||| || || ||| | || |||||| | || ||||||| | || |||||| Sbjct 1382 AGGAGGTAAGAGGTTTAAAAAATGATTAGAAAATAAAAATTCTAAAG--AGAACTATATA 1325 Query 123248 TGTACGTAATT 123258 ||| || || Sbjct 1324 ATTACATATTT 1314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 730223128977600