Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_021304.1 Length=51552 Score E Sequences producing significant alignments: (Bits) Value seq363 190 7e-44 seq1 140 1e-28 seq27787 131 6e-26 seq7 107 6e-19 seq71434 87.8 6e-13 >seq363 Length=289854 Score = 190 bits (210), Expect = 7e-44 Identities = 282/397 (71%), Gaps = 6/397 (2%) Strand=Plus/Plus Query 39552 GGCGGCAGGACCCGCAGGCCCATGCGCCGAGACTCGCCGAGGTACGTGGCCATCTTGTTC 39611 |||||| ||| | |||||||||| ||| |||| ||| | || | ||||||| Sbjct 187263 GGCGGCCGGATCTTCAGGCCCATGGCGCGACACTCCTCGATGAGGGTCACGATCTTGTCG 187322 Query 39612 TTGTCGTCGCCCACCGAGGTGAGCGCAGCCGCCATGTACTCGGCTGGGTAGTGCGTCTTC 39671 ||| | | |||| | ||| | ||||||||| ||||||| ||||| ||| ||| Sbjct 187323 GTGTTGGCCATTTCCGACGACAGCACCGCCGCCATGAACTCGGCCGGGTAATGCACCTTG 187382 Query 39672 AGCCACGCCGTGCGGTACGCGATGAGTCCGTACGCCGCCGAGTGCGCCTTGTTGAAGGCG 39731 ||||| || || |||||| | || |||| || |||||||||| |||||||||| || Sbjct 187383 AGCCAGGCGGTCTGGTACGACACCAGCGCGTAGGCGGCCGAGTGCGACTTGTTGAAGCCG 187442 Query 39732 TAGCCAGCGAACGGGACCAGCACGTCCCACACTGCCTGGATGGCACCGTCCGAGTAG--- 39788 ||||| |||||| ||| | ||| | | |||| | ||| ||||| || | Sbjct 187443 TAGCCGGCGAACTTCTCCATGAGGTCGAAGA-TGCC--GCCGGCCTGGTCCGGGTCGACG 187499 Query 39789 CCTCGCTCGCGCGCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTC 39848 || ||||||| || || | | ||| || ||| ||||||||||| ||||||||||| Sbjct 187500 CCGCGCTCGCCCGAACCTTCCATGAACTTGACGCGCTCCTTGGCCATTTCCTCGGGCTTC 187559 Query 39849 TTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTGACCGAGGGTGTACCCGGCCATGACC 39908 ||||||||||| || ||||| |||| |||||| || || | || ||||||| ||| Sbjct 187560 TTCTTGCCCATGGCGCGGCGGAGCATGTCGGCGCCGCCCAGCGAATAGCCGGCCAGCACC 187619 Query 39909 TGTGCAACCTTCTGCACTTGCTCCTGGTAGATGATGA 39945 || || | || | ||| || |||||||||| ||||| Sbjct 187620 TGGGCGATCTGCATCACCTGATCCTGGTAGAGGATGA 187656 Score = 188 bits (208), Expect = 2e-43 Identities = 187/242 (77%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 40790 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40849 |||||||||||||| ||||||||||||||||||||||| || ||||| |||||||| | Sbjct 188483 GAAGTCGATGTCGAAGTCGGGCATGGACACGCGCTCGGGATTGAGGAAGCGCTCGAACAG 188542 Query 40850 GAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACC 40909 || ||| || | ||| || ||||||||||| || ||| || |||||||| || Sbjct 188543 CAGGTCGTACTTGATCGGATCCAGGTCGGTGATGAACAGCGAGTAAGCCACCAGCGAGCC 188602 Query 40910 GGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAA 40969 ||| | || || || || || || ||| |||||||| | ||| |||||||||||||| Sbjct 188603 GGCGCCGGAACCGCGACCCGGCCCCACCGGCACGCCGTTGTTCTTGGCCCAGCGGATGAA 188662 Query 40970 GTCCGCGACGACGAGGAAGTACGACGGGAAGCCCATCTGGATGATCATGTCGATCTCGTA 41029 |||| ||||| |||||||| ||| || ||||||||| |||| |||| || |||| | Sbjct 188663 GTCCATGACGATCAGGAAGTAGCCCGGAAAACCCATCTGGTTGATGATGTTGAGCTCGAA 188722 Query 41030 CT 41031 || Sbjct 188723 CT 188724 >seq1 Length=1655743 Score = 140 bits (154), Expect = 1e-28 Identities = 227/323 (70%), Gaps = 8/323 (2%) Strand=Plus/Minus Query 40718 GATCTGCGCGACCTTGTCGGCCCCGTAC--TTCCGGGTGACGTACTGGATCACCTCGCCA 40775 ||||||| | ||||||||| || || |||| | || || |||||||||| | Sbjct 660895 GATCTGCCCCACCTTGTCGCGGCCATAGCGTTCCTGC--ACATAGCGGATCACCTCTTCG 660838 Query 40776 CGACG--CCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCA 40833 || || || || |||||||||||||| |||||||| ||||| || || ||||||| Sbjct 660837 CGGCGATCCATGCA--GAAGTCGATGTCGAAGTCGGGCATCGACACCCGTTCCGGGTTCA 660780 Query 40834 GGAACCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGT 40893 |||| || ||||| | ||| | | ||||||||| || |||||||| || | | Sbjct 660779 GGAAGCGTTCGAACAGCAGCGCATAGCGCAGCGGGTCAAGATCGGTGATGGTCAGCGCAT 660720 Query 40894 AGGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCT 40953 | || ||||| || || || | || || ||||| || |||||| || | | | | ||| Sbjct 660719 AAGCCACCAGAGAGCCTGCACCCGACCCCCGCCCCGGACCGACCGGGATGGCATGCGCCT 660660 Query 40954 TCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAAGCCCATCTGGATGA 41013 | ||||| |||||| || || |||| ||||||||| ||| || |||| | || Sbjct 660659 TGGCCCATTTGATGAAATCGGCCACGATGAGGAAGTAGCCCGGAAACTTCATCCGCTCGA 660600 Query 41014 TCATGTCGATCTCGTACTGGAGC 41036 | ||||||| |||| | || ||| Sbjct 660599 TAATGTCGAGCTCGAATTGCAGC 660577 Score = 89.7 bits (98), Expect = 2e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 39824 CTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTG 39883 ||| || |||| |||||| | ||||||||||| || ||||| || |||||||| Sbjct 661798 CTCTTTTGCCATCTCCTCGGCGATTTTCTTGCCCATGGCGCGGCGCAGAAGGTCGGCGCC 661739 Query 39884 ACCGAGGGTGTACCCGGCCATGACCTGTGCAACCTTCTGCACTTGCTCCTGGTAGATGAT 39943 |||||| |||| || |||||||||||||||| || | ||| || ||||| || | ||| Sbjct 661738 GCCGAGGCTGTAGCCCGCCATGACCTGTGCAATCTGCATCACCTGTTCCTGATAAACGAT 661679 Query 39944 GA 39945 || Sbjct 661678 GA 661677 >seq27787 Length=17407 Score = 131 bits (144), Expect = 6e-26 Identities = 227/327 (69%), Gaps = 20/327 (6%) Strand=Plus/Plus Query 39642 GCCATGTACTCGGCTGGGTAGTGCGTCTTCAGCCACGCCGTGCGGTACGCGATGAGTCCG 39701 |||||| || || |||||||||| ||| ||||| || || |||| | || || || Sbjct 1 GCCATGAACGGCGCCGGGTAGTGCGCCTTGAGCCAGGCGGTCTGGTAGGAGACCAGGCCA 60 Query 39702 TACGCCGCCGAGTGCGCCTTGTTGAAGGCGTAGCCAGCGAACGGGACCAGCACGTCCCAC 39761 || || || ||||||| |||||||||| ||||||| |||||| | | || ||| | Sbjct 61 TAGGCTGCGGAGTGCGACTTGTTGAAGCCGTAGCCGGCGAACTTTTCTACCAGGTCAAA- 119 Query 39762 ACTGCCTGGATGGCACCGTCCGAGTA--GCCTCGCTCGCGC-----GCTC--CCTTCTG- 39811 |||| |||| || ||| || ||| | | || | ||||| Sbjct 120 --------GATGTTACCGGCC-AGTTCCGCGTCGATGTTGTTGTTGGCACAACCTTCGAT 170 Query 39812 GAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAG 39871 |||| || || |||||||| |||||||||||||||||||||| || ||||| || Sbjct 171 GAAGCCGCCGCGCTGCTTGGCCATCTCCTCGGGCTTCTTCTTGCCCATGGCGCGGCGCAG 230 Query 39872 CAGGTCGGCCTGACCGAGGGTGTACCCGGCCATGACCTGTGCAACCTTCTGCACTTGCTC 39931 || ||| |||||||| ||||| || || |||||||||| || | || | ||| || || Sbjct 231 CATGTCCGCCTGACCCAGGGTATAGCCACCCATGACCTGGGCGATCTGCATCACCTGTTC 290 Query 39932 CTGGTAGATGATGAGCTGGAAGGTCGG 39958 |||||| | ||||| | ||||||| Sbjct 291 CTGGTACAGGATGATGCCGTAGGTCGG 317 >seq7 Length=747525 Score = 107 bits (118), Expect = 6e-19 Identities = 180/258 (70%), Gaps = 2/258 (1%) Strand=Plus/Plus Query 40790 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40849 |||||||| ||||| || ||||| ||||| ||||| ||||| | || || ||||| | Sbjct 503463 GAAGTCGACGTCGAAGTCTGGCATCGACACCCGCTCCGGGTTTAAAAAACGTTCGAAAAG 503522 Query 40850 GAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACC 40909 || | ||| ||||| || || ||||| || || | || || |||||||| || Sbjct 503523 CAGGTCAAACTCAAGCGGATCCAGATCGGTAATTTTTAGCGCATAAGCTACCAGCGAGCC 503582 Query 40910 GGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAA 40969 ||| | || || ||||| ||||| ||| | |||| ||||| ||| | || || Sbjct 503583 GGCGCCGGAACCCCGCCCCGGGCCAACCGGAATATCGTTATCCTTACTCCACTGAATAAA 503642 Query 40970 GTCCGCGACGACGAGGAAGTACGACGGGAA-GCCCATCTGGATGATCATGTCGATCTCGT 41028 ||| || || |||||||| | |||||| |||||||||| | |||| |||| || Sbjct 503643 CTCCATTACAACCAGGAAGTA-GCCGGGAAAGCCCATCTGGTTAATCACATCGAGTTCAA 503701 Query 41029 ACTGGAGCTGCTTGCCGT 41046 ||| ||| ||| | ||| Sbjct 503702 TCTGTAGCCGCTCGTCGT 503719 >seq71434 Length=5066 Score = 87.8 bits (96), Expect = 6e-13 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 40930 GGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGT 40989 |||||||| ||| |||| | ||||||||| |||||||||| |||| |||||||| Sbjct 967 GGCCGACCGGCACGTCGTTGTTCTTCGCCCACTTGATGAAGTCCATCACGATGAGGAAGT 908 Query 40990 ACGACGGGAAGCCCATCTGGATGATCATGTCGATCTCG 41027 | |||||||||||||| ||||| ||||||| |||| Sbjct 907 AACCGGGGAAGCCCATCTGAATGATGATGTCGAGCTCG 870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164491982262448