Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq3311 158 4e-33 seq57698 120 9e-22 seq4656 113 1e-19 seq1973 113 1e-19 seq38288 96.9 1e-14 seq17530 91.5 4e-13 seq5663 91.5 4e-13 seq15220 89.7 2e-12 >seq3311 Length=126560 Score = 158 bits (174), Expect = 4e-33 Identities = 258/366 (70%), Gaps = 17/366 (5%) Strand=Plus/Plus Query 289012 GAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGA- 289070 |||| || | |||| |||||||| ||||||||| ||||| ||||| ||||| |||| Sbjct 107727 GAATTACTTCGTTTTGCACCAACAGAATCAATTTCATCAATAAAAATTACACAAGGAGCT 107786 Query 289071 ----ATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACAT 289126 |||||| |||| | || | | | |||||||| | |||||| | ||||| Sbjct 107787 CTAGATTTTG-CTCG--ACTGAAGAGA--TCTCTTACTCTTCGTGCTCCTTGTCCAACCA 107841 Query 289127 ACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTA 289186 | ||||| ||||||||| | | | | |||| |||| ||||| || || || || | Sbjct 107842 ATATTTCATCAAATTCAGGACCTGCAGCATGAAAAAATGGTACATCAGCCTCTCCAGCAA 107901 Query 289187 CTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTG 289246 | || || || | | ||| || || ||||||||||| || |||||| ||||| || | Sbjct 107902 CAGCTCTTGCTAACAATGTTTTCCCAGTTCCAGGTGGGCCAACTAATAATACTCCTTTCG 107961 Query 289247 GTACTTTTGCCCC---AGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTT 289303 ||| ||| |||| ||| || | ||||||| || | ||||||||||| ||||||| Sbjct 107962 GTAATTTACCCCCCAAAGCTGA---AAATTTCTCTGGATTTTTTAAAAATTCAACAATTT 108018 Query 289304 CCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGTAATATTAATAT 289363 | | ||||| | |||||| ||||| ||| |||||| ||| |||| || ||| | Sbjct 108019 CTTGCAGTTCTTGTTTTGCTTCATCTACCCCTTTAACATCATTAAATGTAACATCAATTT 108078 Query 289364 CGTTCT 289369 | |||| Sbjct 108079 C-TTCT 108083 >seq57698 Length=6283 Score = 120 bits (132), Expect = 9e-22 Identities = 232/337 (69%), Gaps = 8/337 (2%) Strand=Plus/Minus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 ||||||||||||||| || ||||| || || | ||| || | || || |||| | | Sbjct 4894 ACCAACAGCATCAATCTCATCAATAAAGATGATACAAGGCGCATGACGTTTCGCTTGTTC 4835 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 ||| | || | ||||| ||||| || | |||||| ||||||| ||||| |||||| | Sbjct 4834 AAACATATCACGAACACGCGATGCACCTACACCAACGAACATTTCGACAAAGTCAGAACC 4775 Query 289149 --GGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206 ||||| |||| ||| | ||| || ||||| || || | ||| | || | | ||| Sbjct 4774 AGAGATAC-TGAA-GAAAGGTACTTTAGCTTCACCAGCAATTGCTTTTGCTAATAATGTT 4717 Query 289207 TTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGAC 289266 |||||||| || || || || | | | || || || | | || ||| |||| Sbjct 4716 TTACCTGTACCTGGAGGGCCAACCATCAATACACCACGAGGAATGGTCGCACCA--AGAC 4659 Query 289267 --TTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCT 289324 ||| |||| ||||| ||||| || || || ||||| | | ||| | |||||| | Sbjct 4658 GTTTAAATTTGGCAGGGTCTTTTAAGAAATCAACGATTTCAACCACTTCTTGTTTTGCTT 4599 Query 289325 CATCACATCCTGCTACATCAGCAAAAGTAATATTAAT 289361 ||||||| || || |||||| ||| || | ||||| Sbjct 4598 CATCACAACCAGCAACATCACTAAACGTTAACTTAAT 4562 >seq4656 Length=104629 Score = 113 bits (124), Expect = 1e-19 Identities = 212/310 (68%), Gaps = 4/310 (1%) Strand=Plus/Plus Query 289036 GCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA--AATA 289093 ||||| || || ||||| || || | ||| || | |||| | | || |||| || | Sbjct 23676 GCATCGATCTCATCAATAAAGATGATACATGGCGCTTTTTCTTTTGC--TTGCTTGAACA 23733 Query 289094 ATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATA 289153 | || | ||||||||||| |||| ||| || |||| || || || |||||| | || | Sbjct 23734 AATCGCGAACACGGGATGCCCCAACACCTACGAACATCTCCACGAAGTCAGAACCTGACA 23793 Query 289154 CTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTG 289213 | ||| | ||| | ||||||||||||||||| |||||| | || ||||| | Sbjct 23794 AGGAGAAGAAAGGTACTTGCGCTTCGCCTGCTACTGCTTTCGCCAACAAGGTTTTACCGG 23853 Query 289214 TTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATT 289273 |||| || || || ||||||| |||| || || | || | || | |||||| Sbjct 23854 TTCCCGGAGGGCCTACTAATAGCGCTCCTTTAGGGATCTTACCTCCTAAATCGGTATATT 23913 Query 289274 TCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATC 289333 ||| ||| | || || || || || |||||| | || | ||||||||| || ||| Sbjct 23914 TCTTCGGGTTTTTCAAGAAATCCACGATTTCCATGACCTCTTGTTTTGCCTCTTCCAATC 23973 Query 289334 CTGCTACATC 289343 | || ||||| Sbjct 23974 CAGCAACATC 23983 >seq1973 Length=162522 Score = 113 bits (124), Expect = 1e-19 Identities = 224/328 (68%), Gaps = 8/328 (2%) Strand=Plus/Plus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 ||| ||||||||||| || ||||||||||| | ||| || | || || | || | | Sbjct 27362 ACCTACAGCATCAATCTCATCAATGAAAATGATACATGGTGCATGACGTTTAGCTTGTTC 27421 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 || | || | ||||| || || |||| ||||||| ||||||| || || |||||| | Sbjct 27422 GAACATATCACGAACACGAGAAGCACCAACACCAACAAACATTTCAACGAAATCAGAACC 27481 Query 289149 GG--ATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206 | ||||| || ||| | || || ||||| || || | ||| | || | | ||| Sbjct 27482 AGAAATACT--AAAGAAAGGAACTTTAGCTTCACCAGCAATTGCTTTGGCTAATAATGTT 27539 Query 289207 TTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGAC 289266 ||||| || || || || || | | || || || ||| | |||| ||| |||| Sbjct 27540 TTACCCGTACCTGGAGGACCAACCATTAACACACCACGTGGAATAGTTGCACCA--AGAC 27597 Query 289267 --TTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCT 289324 || |||| | || ||||| || || |||||||| | | ||| | |||||| | Sbjct 27598 GTTTGAATTTTGCTGGATCTTTTAAGAAATCGACAATTTCAACGACTTCTTGTTTTGCTT 27657 Query 289325 CATCACATCCTGCTACATCAGCAAAAGT 289352 | ||||| ||||| ||||||| ||| || Sbjct 27658 CGTCACAACCTGCAACATCAGTAAACGT 27685 >seq38288 Length=11396 Score = 96.9 bits (106), Expect = 1e-14 Identities = 111/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 133211 CATTTTATTTCT-ATGATTTTAGCGTTTTTTGCTGCGAGTGATGGTATTGTTCTTGAAAA 133269 |||||| |||| ||| || | || |||||||| || |||||||||||||| ||||||| Sbjct 8113 CATTTTCTTTCCCATG-TTCTGGCCTTTTTTGCCGCCAGTGATGGTATTGTAATTGAAAA 8055 Query 133270 TTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCT 133329 ||||| ||| || | ||||| || || |||||| ||| ||||||||| | Sbjct 8054 TTTAGTGGAACGCTTCGCTCGCGAAGTCAAAGTGACCGAAGTTCGTTGCTTTTATGGCTT 7995 Query 133330 ACAGATTGCGATGGAAAATATCCATTC 133356 |||||||| || |||||||| ||||| Sbjct 7994 TCAGATTGCCATTGAAAATATACATTC 7968 >seq17530 Length=33351 Score = 91.5 bits (100), Expect = 4e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 289099 CTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA 289158 ||||| | |||| |||| |||||| ||||||||| ||| || || | |||||| | Sbjct 31900 CTTACCCTAGATGGACCAACTCCAACAAACATTTCTAAAAACTCTGATCCAGATACTGTA 31841 Query 289159 ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCA 289218 ||||| | |||||||||||| || ||| || | || || ||||| || ||||||||| Sbjct 31840 ATGAAAGGTACATTTGCTTCACCAGCTGTAGCTTTGGCAAGTAGTGTTTTTCCTGTTCCA 31781 Query 289219 GGTGGTCC 289226 || ||||| Sbjct 31780 GGAGGTCC 31773 >seq5663 Length=92856 Score = 91.5 bits (100), Expect = 4e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 133073 AGGTTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAACAGCAA 133132 |||||||| || || || ||| || | | || || ||||| ||||| || ||| || Sbjct 71793 AGGTTTGTCATATTTCCTATTGAGTATCAGGACATCTGGCAAATGTACAAGAAAGCTGAA 71852 Query 133133 GATTTATTTTGGACTTCAACTGAAGTAGATTTATCCAAAGACCCAGCCCACTGGGAAGCC 133192 | | |||||||||| | ||||| || ||||| ||||| | | |||||| Sbjct 71853 GCATCATTTTGGACTGCTGAAGAAGTTGACTTATCAAAAGATCTGATAGATTGGGAAAAA 71912 Query 133193 CTTACTGGGGATGAAAAACATTTTATTTCTATGATTTTAGCGTTTTTTGCTGCGAGTGAT 133252 | | ||| ||||| |||||||| || |||||||| ||||||||||| |||||| Sbjct 71913 TTAAAACCGGAAGAAAAGCATTTTATCTCCCATATTTTAGCCTTTTTTGCTGCCAGTGAT 71972 Query 133253 GGTATTGTTCTTGAAAATTT 133272 || ||||| |||||| || Sbjct 71973 GGCATTGTGAATGAAAACTT 71992 >seq15220 Length=39705 Score = 89.7 bits (98), Expect = 2e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| ||||| | ||||||||||||||||| ||| || ||||| ||||| ||| Sbjct 13870 TCCATAGCTTTGATCAGTCGACGCTGAATATAACCTGTTTCAGCAGTTTTCACAGCAGTA 13811 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTC 302678 ||||| ||||| | ||||| ||||||||||| || || | ||| Sbjct 13810 TCAATAAGACCTTCTCGACCTCCCATAGCATGAAAAAAGAACTC 13767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1468418770251532