Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_021339.1 Length=51077 Score E Sequences producing significant alignments: (Bits) Value seq363 190 7e-44 seq1 143 9e-30 seq27787 131 5e-26 seq53823 80.6 9e-11 >seq363 Length=289854 Score = 190 bits (210), Expect = 7e-44 Identities = 233/316 (74%), Gaps = 4/316 (1%) Strand=Plus/Plus Query 40178 GATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGACGTACTGGATGACCTCGCCACG 40237 |||||||| ||| ||| ||||| | || || ||||||| |||||| | | || Sbjct 188411 GATCTGCGACACCGCTTCGCGGCCGTAGTGCCCGGCCACGTACTCGATGACGCGGTCGCG 188470 Query 40238 ACG--CCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGG 40295 | || || |||||||||||||| ||||||||||||||||||||||| || ||| Sbjct 188471 CCCTTCCATGCA--GAAGTCGATGTCGAAGTCGGGCATGGACACGCGCTCGGGATTGAGG 188528 Query 40296 AAGCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAG 40355 ||||||||||| | || ||| || | ||| || ||||||||||| || ||| Sbjct 188529 AAGCGCTCGAACAGCAGGTCGTACTTGATCGGATCCAGGTCGGTGATGAACAGCGAGTAA 188588 Query 40356 GCGACCAGCGAACCGGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCCTTC 40415 || |||||||| ||||| | || || || || || || ||| || ||||| | ||| Sbjct 188589 GCCACCAGCGAGCCGGCGCCGGAACCGCGACCCGGCCCCACCGGCACGCCGTTGTTCTTG 188648 Query 40416 GCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGATGATC 40475 |||||||||||||||||| ||||| |||||||| ||| || ||||||||| |||| Sbjct 188649 GCCCAGCGGATGAAGTCCATGACGATCAGGAAGTAGCCCGGAAAACCCATCTGGTTGATG 188708 Query 40476 ATGTCGATCTCGTACT 40491 |||| || |||| ||| Sbjct 188709 ATGTTGAGCTCGAACT 188724 Score = 181 bits (200), Expect = 3e-41 Identities = 235/322 (73%), Gaps = 6/322 (2%) Strand=Plus/Plus Query 39085 CCGAGGTGAGCGCAGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAACCACGCCGTGC 39144 |||| | ||| | ||||||||| ||||||||||||| ||| ||| | ||| || || Sbjct 187336 CCGACGACAGCACCGCCGCCATGAACTCGGCCGGGTAATGCACCTTGAGCCAGGCGGTCT 187395 Query 39145 GGTACGCGATGAGTCCGTACGCCGCCGAGTGCGCCTTGTTGAAGGCGTAGCCAGCGAAGG 39204 |||||| | || |||| || |||||||||| |||||||||| ||||||| ||||| Sbjct 187396 GGTACGACACCAGCGCGTAGGCGGCCGAGTGCGACTTGTTGAAGCCGTAGCCGGCGAACT 187455 Query 39205 GGACCAGCACGTCCCACACTGCCTGGATGGCACCGTCCGAGTAG---CCTCGCTCGCGCG 39261 ||| | ||| | | |||| | ||| ||||| || | || ||||||| || Sbjct 187456 TCTCCATGAGGTCGAAGA-TGCC--GCCGGCCTGGTCCGGGTCGACGCCGCGCTCGCCCG 187512 Query 39262 CTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCG 39321 || | | ||| || ||| ||||||||||| |||||||||||||||||||||| | Sbjct 187513 AACCTTCCATGAACTTGACGCGCTCCTTGGCCATTTCCTCGGGCTTCTTCTTGCCCATGG 187572 Query 39322 CCCGGCGAAGCAGGTCGGCCTGACCCAGGGTGTACCCGGCCATGACCTGTGCAACCTTCT 39381 | ||||| |||| |||||| ||||| | || ||||||| ||||| || | || | Sbjct 187573 CGCGGCGGAGCATGTCGGCGCCGCCCAGCGAATAGCCGGCCAGCACCTGGGCGATCTGCA 187632 Query 39382 GCACCTGCTCCTGGTAGATGAT 39403 |||||| |||||||||| ||| Sbjct 187633 TCACCTGATCCTGGTAGAGGAT 187654 >seq1 Length=1655743 Score = 143 bits (158), Expect = 9e-30 Identities = 180/247 (73%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 40250 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGAT 40309 |||||||||||||| |||||||| ||||| || || |||||||||||||| ||||| | Sbjct 660823 GAAGTCGATGTCGAAGTCGGGCATCGACACCCGTTCCGGGTTCAGGAAGCGTTCGAACAG 660764 Query 40310 GAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACC 40369 ||| | | ||||||||| || |||||||| || | || || ||||| || || Sbjct 660763 CAGCGCATAGCGCAGCGGGTCAAGATCGGTGATGGTCAGCGCATAAGCCACCAGAGAGCC 660704 Query 40370 GGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCCTTCGCCCAGCGGATGAA 40429 || | || |||||||| || |||||| || | | | |||| ||||| |||||| Sbjct 660703 TGCACCCGACCCCCGCCCCGGACCGACCGGGATGGCATGCGCCTTGGCCCATTTGATGAA 660644 Query 40430 GTCCGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGATGATCATGTCGATCTCGTA 40489 || || |||| ||||||||| ||| ||| |||| | ||| ||||||| |||| | Sbjct 660643 ATCGGCCACGATGAGGAAGTAGCCCGGAAACTTCATCCGCTCGATAATGTCGAGCTCGAA 660584 Query 40490 CTGGAGC 40496 || ||| Sbjct 660583 TTGCAGC 660577 Score = 86.0 bits (94), Expect = 2e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 39284 CTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTG 39343 ||| || |||| |||||| | ||||||||||| || ||||| || |||||||| Sbjct 661798 CTCTTTTGCCATCTCCTCGGCGATTTTCTTGCCCATGGCGCGGCGCAGAAGGTCGGCGCC 661739 Query 39344 ACCCAGGGTGTACCCGGCCATGACCTGTGCAACCTTCTGCACCTGCTCCTGGTAGATGAT 39403 || ||| |||| || |||||||||||||||| || | |||||| ||||| || | ||| Sbjct 661738 GCCGAGGCTGTAGCCCGCCATGACCTGTGCAATCTGCATCACCTGTTCCTGATAAACGAT 661679 >seq27787 Length=17407 Score = 131 bits (144), Expect = 5e-26 Identities = 218/312 (70%), Gaps = 20/312 (6%) Strand=Plus/Plus Query 39102 GCCATGTACTCGGCCGGGTAGTGCGTCTTCAACCACGCCGTGCGGTACGCGATGAGTCCG 39161 |||||| || ||||||||||||| ||| | ||| || || |||| | || || || Sbjct 1 GCCATGAACGGCGCCGGGTAGTGCGCCTTGAGCCAGGCGGTCTGGTAGGAGACCAGGCCA 60 Query 39162 TACGCCGCCGAGTGCGCCTTGTTGAAGGCGTAGCCAGCGAAGGGGACCAGCACGTCCCAC 39221 || || || ||||||| |||||||||| ||||||| ||||| | | || ||| | Sbjct 61 TAGGCTGCGGAGTGCGACTTGTTGAAGCCGTAGCCGGCGAACTTTTCTACCAGGTCAAA- 119 Query 39222 ACTGCCTGGATGGCACCGTCCGAGTA--GCCTCGCTCGCGC-----GCTC--CCTTCTG- 39271 |||| |||| || ||| || ||| | | || | ||||| Sbjct 120 --------GATGTTACCGGCC-AGTTCCGCGTCGATGTTGTTGTTGGCACAACCTTCGAT 170 Query 39272 GAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAG 39331 |||| || || |||||||| |||||||||||||||||||||| || ||||| || Sbjct 171 GAAGCCGCCGCGCTGCTTGGCCATCTCCTCGGGCTTCTTCTTGCCCATGGCGCGGCGCAG 230 Query 39332 CAGGTCGGCCTGACCCAGGGTGTACCCGGCCATGACCTGTGCAACCTTCTGCACCTGCTC 39391 || ||| |||||||||||||| || || |||||||||| || | || | |||||| || Sbjct 231 CATGTCCGCCTGACCCAGGGTATAGCCACCCATGACCTGGGCGATCTGCATCACCTGTTC 290 Query 39392 CTGGTAGATGAT 39403 |||||| | ||| Sbjct 291 CTGGTACAGGAT 302 >seq53823 Length=7075 Score = 80.6 bits (88), Expect = 9e-11 Identities = 94/127 (74%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 39271 GGAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAA 39330 ||||| || || | |||||||| | | ||| ||||||||||||||| ||||| | Sbjct 6971 GGAAGATCTCGCGGTGCTTGGCCATTTCGGCAGGCACCTTCTTGCCCATCGCGCGGCGCA 6912 Query 39331 GCAGGTCGGCCTGACCCAGGGTGTACCCGGCCATGACCTGTGCAACCTTCTGCACCTGCT 39390 |||||||||| ||||| | ||| ||| | | || ||| || | || | |||||||| Sbjct 6911 GCAGGTCGGCGCCGCCCAGCGAGTAGCCGCCGACGATCTGCGCCATCTGCATCACCTGCT 6852 Query 39391 CCTGGTA 39397 ||||||| Sbjct 6851 CCTGGTA 6845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 162975235522248