Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_021344.2 Length=176227 Score E Sequences producing significant alignments: (Bits) Value seq5 239 5e-58 seq100896 123 3e-23 >seq5 Length=869209 Score = 239 bits (264), Expect = 5e-58 Identities = 363/512 (71%), Gaps = 15/512 (3%) Strand=Plus/Plus Query 41641 TAAGCTGTCGTTACCTACGCCTATTATGGCTGGTGTGCGTACTCCTACGCGTCAGTTTTC 41700 |||| | || | || || ||||||||| | || |||||||| || || |||||||| Sbjct 710752 TAAGATTTCACTGCCGACACCTATTATGTCGGGCGTGCGTACCCCAACCCGTCAGTTCAG 710811 Query 41701 CAGTTGCGTAGTGATTGAATCAGGTGATTCACTGGGTTCTCTGAATGCTGTAACCTC--- 41757 | |||||| ||||||| | ||||| |||| ||| | ||||| ||||| Sbjct 710812 CTCCTGCGTACTGATTGAGTGTGGTGACAGCCTGGATTCGATCAATGCC---ACCTCCAG 710868 Query 41758 TGCGATCGTGAAGTATATTTCACAACGTGCTGGTATCGGTGTAAACGCCGGACATATTCG 41817 ||| || || || || | || || || || ||||| ||| | ||||| || | |||||| Sbjct 710869 TGCCATTGTAAAATACGTGTCGCAGCGCGCAGGTATTGGTATTAACGCAGGCCGTATTCG 710928 Query 41818 CGCGATGGGTTCTAAAATCCGTGGTGGTGAAGCAGTTCATACAGGCGTGATCCCGTTCTG 41877 ||| | ||| ||||||| ||| ||||| ||||||| ||| |||||||| | Sbjct 710929 CGCTTTAGGTAGCCCAATCCGTAATGGCGAAGCCTTTCATACTGGCTGTATCCCGTTTTA 710988 Query 41878 GAAACATATTCAGACAGCGGTTAAATCCTGTTCACAAGGTGGTGTTCGTGGTGGTGCTGC 41937 || ||| | ||||| || || ||| ||| || ||||| ||||| ||||||||||| || Sbjct 710989 TAAGCATTTCCAGACCGCAGTAAAAAGCTGCTCGCAAGGCGGTGTGCGTGGTGGTGCCGC 711048 Query 41938 AACGTTGTATTATCCGATCTGGCATTTGGAAGTTGAAAACCTGCTGGTTCTGAAAAACAA 41997 || ||| || || | |||||| ||||||| ||| |||||||| |||||||| || Sbjct 711049 CACCCTGTTCTACCCCTTGTGGCATCTGGAAGTGGAATCGCTGCTGGTACTGAAAAATAA 711108 Query 41998 CAAAGGTGTTGAAAACAACCGTATCCGTCACCTGGATTATGGCGTACAGCTTAACGATTT 42057 | ||||| ||| | ||||| | | || ||||| |||||||| ||| ||||| | Sbjct 711109 CCGCGGTGTAGAAGAGAACCGGGTAAGGCATCTGGACTATGGCGTGCAGTTTAACCGCCT 711168 Query 42058 GATGTATAAACGTTTGATGAATAACGATTACATCACTCTGTTCAGCC---CTGATGTTGC 42114 ||||||| | || |||| || | || || ||||| ||||||||| |||||| ||| Sbjct 711169 GATGTATCAGCGCCTGATTAAAGATGACTATATCACCTTGTTCAGCCCCTCTGATG-TGC 711227 Query 42115 TAACGATCGTCTGTATGATGCGTTCTATCAAG 42146 || | ||||||||||| |||| | ||| Sbjct 711228 ---CG--GGGCTGTATGATGCCTTCTTTGAAG 711254 >seq100896 Length=2131 Score = 123 bits (136), Expect = 3e-23 Identities = 260/388 (67%), Gaps = 6/388 (2%) Strand=Plus/Plus Query 42852 TGCGTAACTCAACGCTTTCTGCTTTAATGCCATGTGAGAGTAGTTCTCAAGTAAGTAACT 42911 |||||||||||||||| ||||| | ||||| | |||| || ||| | |||| Sbjct 2 TGCGTAACTCAACGCTATCTGCCCTTATGCCTTCAGAGACATCATCGCAAATCTCTAACG 61 Query 42912 CCACAAACGGTATTGAACCGCCTCGCGGCCCTGTGAGTGTGAAATCTTCGAAGGAAGGTT 42971 | ||||| ||||| || || || || || | | | ||||| ||| | || || ||| Sbjct 62 CGACAAATGGTATCGAGCCACCACGTGGTCATATCAGTGTTAAAGCAAGTAAAGATGGTA 121 Query 42972 CATTTAACCAGGTAGTTCCGAACCATAATGACCAGATTGATTTCTATGATTATCTCTGGA 43031 || || || ||||| || | || | | | | ||| ||| || || ||| Sbjct 122 TCTTAAAGCAAGTAGTGCCTGATTATGAAAATCTTAAAGATAACTACGAGCTACTGTGGG 181 Query 43032 CAATGGCTAAACGCGGTAACAAAGGTTATCTGTCTCATGTTGCTGTTATGCAGAAGTTTG 43091 || || | ||| | |||||||| | ||||| | ||||||| || || | Sbjct 182 ATATTCCTTCA------AACGATGGTTATCTACAACTTGTTGGTATTATGCAAAAATTCG 235 Query 43092 TTGACCAGGCTATCTCTGCAAACACCGACTATGATCCGGCTAACTATGCTGATGGTAAAG 43151 ||||||| | |||||||||||||| |||||||||| |||| || | | ||||||| Sbjct 236 TTGACCAAACGATCTCTGCAAACACTAACTATGATCCATCTAAGTACGAAGGCGGTAAAG 295 Query 43152 TTCCGACTGAGGAAATCTTAGATGACCTCCTGTACGCGAACTATTTCGGTGTTAAAACAC 43211 | || | ||| | ||| | ||||| ||| ||| | | | ||||||||||| | Sbjct 296 TACCTATGAAGGTGCTATTAAAAGACCTACTGACTGCGTATAAACTTGGTGTTAAAACTC 355 Query 43212 TGTATTACCACAACACCCGCGATGGTGC 43239 |||| || |||||||| || |||||||| Sbjct 356 TGTACTATCACAACACACGTGATGGTGC 383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562528190394720