Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_021529.2 Length=247511 Score E Sequences producing significant alignments: (Bits) Value seq100896 89.7 8e-13 seq5 87.8 3e-12 >seq100896 Length=2131 Score = 89.7 bits (98), Expect = 8e-13 Identities = 176/257 (68%), Gaps = 10/257 (4%) Strand=Plus/Plus Query 64917 TCACAAATCAGTAACAGTACAAATGGCATCGAGCCGCCACGCGATC-TAGTATCGACTAA 64975 || |||||| |||| |||||||| |||||||| ||||| | || || | | || Sbjct 46 TCGCAAATCTCTAACGCGACAAATGGTATCGAGCCACCACGTGGTCATATCAGTGTTAAA 105 Query 64976 GCA-GTCAAAAGATGGTGTATTCAACCAAGTAGTTCCTGAAGTTGATTTGCTGAAAGATG 65034 ||| || ||||||||| | || || |||||||| ||||| ||| || |||||| Sbjct 106 GCAAGT--AAAGATGGTATCTTAAAGCAAGTAGTGCCTGATTATGAAAATCTTAAAGATA 163 Query 65035 AATACGGTCTAGCGTGGAAAGTTTGTGCGAAAGACAACTATGGTTATCTGACTCTAGTTG 65094 | |||| ||| |||| | || | | || || ||||||||| || |||| Sbjct 164 ACTACGAGCTACTGTGGGATATTCCTTCAAACGA------TGGTTATCTACAACTTGTTG 217 Query 65095 CAATTATGCAGAAATTCGTTGACCAGAGCATCTCCGCTAATGAATACCACGATCCTTCAC 65154 |||||||| |||||||||||||| | ||||| || || || | ||||| || Sbjct 218 GTATTATGCAAAAATTCGTTGACCAAACGATCTCTGCAAACACTAACTATGATCCATCTA 277 Query 65155 AGATCGAAGATGGTAAA 65171 || ||||| |||||| Sbjct 278 AGTACGAAGGCGGTAAA 294 >seq5 Length=869209 Score = 87.8 bits (96), Expect = 3e-12 Identities = 172/252 (68%), Gaps = 2/252 (1%) Strand=Plus/Plus Query 63885 CACACTGG-TGTAATCCCATTCTGGAAACACTTTCAGACTGCTGTGAAGTCATGTTCACA 63943 || ||||| |||| |||| || | || || || ||||| || || || || || || Sbjct 710966 CATACTGGCTGTA-TCCCGTTTTATAAGCATTTCCAGACCGCAGTAAAAAGCTGCTCGCA 711024 Query 63944 AGGTGGTGTTCGTGGTGGTGCTGCAACGCTAACTTACCCGATTTGGCATTTAGAAGTTGA 64003 ||| ||||| ||||||||||| || || || ||||| | |||||| | ||||| || Sbjct 711025 AGGCGGTGTGCGTGGTGGTGCCGCCACCCTGTTCTACCCCTTGTGGCATCTGGAAGTGGA 711084 Query 64004 AAAACTTTTGGTGCTGAAGAACAACAAAGGCGTTGAAGAAAACCGTATTCGTCATCTTGA 64063 | || |||| ||||| || ||| || || ||||| ||||| | | ||||| || Sbjct 711085 ATCGCTGCTGGTACTGAAAAATAACCGCGGTGTAGAAGAGAACCGGGTAAGGCATCTGGA 711144 Query 64064 CTACAGTGTGTCTATCAGTCGCTTGATGATGCAACGTCTAGCAACAAATGATTACATCAC 64123 ||| | ||| | | ||| ||||| || || || | | |||| || ||||| Sbjct 711145 CTATGGCGTGCAGTTTAACCGCCTGATGTATCAGCGCCTGATTAAAGATGACTATATCAC 711204 Query 64124 GTTGTTTAGCCC 64135 ||||| ||||| Sbjct 711205 CTTGTTCAGCCC 711216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 790123072673760