Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_021534.1 Length=47552 Score E Sequences producing significant alignments: (Bits) Value seq34866 123 8e-24 seq164795 80.6 8e-11 >seq34866 Length=13211 Score = 123 bits (136), Expect = 8e-24 Identities = 204/293 (70%), Gaps = 6/293 (2%) Strand=Plus/Minus Query 33184 AACAAAGTAATCATTTTGGGCACTCTCGGACAAGACCCGGAAGTTAAATATATGCCTTCT 33243 |||||||| ||| | | || | | | || ||||| || ||||| ||||||||| | Sbjct 5937 AACAAAGTTATCTTGGTTGGTAATTTAGGCCAAGATCCAGAAGTACGTTATATGCCTAAT 5878 Query 33244 GGC---GGCGCTGTGTGCAATCTGTCTCTGGCAACATCAGAGCAGTGGAACGATAAAGCA 33300 ||| |||| | | ||| | | || || |||| ||||| |||||| Sbjct 5877 GGCAATGGCGTAGCG---AATATCAGCATTGCTACGACAGATAGCTGGAAAGATAAAAAC 5821 Query 33301 ACAGGGGAAAAGAAAGAGCAGACAGAATGGCATCGCGTGGTTATCTTCGGAAAGCTGGCA 33360 |||||| ||| | |||||| || |||||||| || || || | || || || || ||| Sbjct 5820 ACAGGGCAAATGCAAGAGCGTACTGAATGGCACCGTGTCGTGTTATTTGGCAAACTAGCA 5761 Query 33361 GAGGTGGCTGGCGAATACCTGCGCAAAGGCTCTCAGGTGTATGTAGAAGGAAAATTACGT 33420 || || ||||| |||||||| || ||||| || || ||||| | ||||| |||| Sbjct 5760 GAAGTTGCTGGTGAATACCTTCGTAAAGGTTCACAAGTGTACATCGAAGGTCGTTTACAA 5701 Query 33421 ACTCGCAAATGGACAGATCAAAGCGGTGTTGAAAAATACACTACTGAAATCGT 33473 || || |||||||| |||||| || |||||||||||||| |||||||| Sbjct 5700 ACGCGTAAATGGACTGATCAATCAGGCCAAGAAAAATACACTACAGAAATCGT 5648 >seq164795 Length=1075 Score = 80.6 bits (88), Expect = 8e-11 Identities = 93/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 33280 GAGCAGTGGAACGATAAAGCA-ACAGGGGAAAAGAAAGAGCAGACAGAATGGCATCGCGT 33338 |||||||||| ||| || ||| || || | ||| ||| |||| || ||||| ||||| Sbjct 538 GAGCAGTGGACCGACAA-GCAGACCGGTCAGAAGGTCGAGAAGACCGAGTGGCACCGCGT 480 Query 33339 GGTTATCTTCGGAAAGCTGGCAGAGGTGGCTGGCGAATACCTGCGCAAAGGCTCTCAGGT 33398 | | ||||| ||| | || ||| | || ||||||||||||||||| || || ||||| Sbjct 479 TGCCCTGTTCGGCAAGGTCGCCGAGATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGT 420 Query 33399 GTA 33401 ||| Sbjct 419 GTA 417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151719378134448